View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2847_low_9 (Length: 238)
Name: NF2847_low_9
Description: NF2847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2847_low_9 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 35142964 - 35143185
Alignment:
| Q |
17 |
atctctgaagtaatttctccagtcaaattgttgcttgataaattcaatgacaccaatgctatcaagtttcctatttcttctggaatgtctcctgtaaata |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
35142964 |
atctctgaagtaatttccccagtcaaattgttgcttgataaattcaatgacaccaatgctatcaagtttcctatttcttccggaatgtctcctgtcaata |
35143063 |
T |
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| Q |
117 |
gattgcttgatagatcaatactccttaaaatgagttcattattcttgaatattcgtgctgcacctttccacatcaataatgcaaccaaatcatagcctac |
216 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
35143064 |
gattgcttgatagatcaatactcctcaaaatgagtttattattcttgaatagtcgtgctgcacctttccacattaataatgcaaccaaatcatagccttc |
35143163 |
T |
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| Q |
217 |
atagagaatgcttcttccaaat |
238 |
Q |
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|||||||| |||| |||||||| |
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| T |
35143164 |
atagagaacgctttttccaaat |
35143185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 37164901 - 37164723
Alignment:
| Q |
22 |
tgaagtaatttctccagtcaaattgttgcttgataaattcaatgacaccaatgctatcaagtttcctatttcttctggaatgtctcctgtaaatagattg |
121 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |
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| T |
37164901 |
tgaagtaatttcccctgtcaaattgttgcttgataaattcaatgacaccaatgctatcaagtttcctatttcttctggaaggtctcctgtcaattgattg |
37164802 |
T |
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| Q |
122 |
cttgatagatcaatactccttaaaatgagttcattattcttgaatattcgtgctgcacctttccacatcaataatgcaa |
200 |
Q |
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| T |
37164801 |
cttgatagatcaatgcttctcaaaatgagcttattattcttgaatagtcgttctgtacctttccacatcatcaatgcaa |
37164723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 38749122 - 38748920
Alignment:
| Q |
17 |
atctctgaagtaatttctccagtcaaattgttgcttgataaattcaatgacaccaatgctatcaagtttcctatttcttctggaatgtctcctgtaaata |
116 |
Q |
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|||| |||||||||||||||| ||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||| | |||| | ||| |
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| T |
38749122 |
atctttgaagtaatttctccattcaaattgttgtttgataaattcaacgacaccaactctatcaagtttcctatttcttctggaatatttcctatcaatt |
38749023 |
T |
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| Q |
117 |
gattgcttgatagatcaatactccttaaaatgagttcattattcttgaatattcgtgctgcacctttccacatcaataatgcaaccaaatcatagcctac |
216 |
Q |
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||||| |||||||||||||||| || |||||||| | ||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| | |
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| T |
38749022 |
gattgtttgatagatcaatacttctcaaaatgagcttattattcttgaattatcgttctgcacctttccacatcaataatgcaaagaaatcatagccttc |
38748923 |
T |
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| Q |
217 |
ata |
219 |
Q |
| |
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||| |
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| T |
38748922 |
ata |
38748920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 37139532 - 37139336
Alignment:
| Q |
23 |
gaagtaatttctccagtcaaattgttgcttgataaattcaatgacaccaatgctatcaagtttcctatttcttctggaatgtctcctgtaaatagattgc |
122 |
Q |
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|||| ||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | ||| |||||| |
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| T |
37139532 |
gaaggaatttctcctgtcaacttgttgcatgataaattcaatgacaccaactctatcaagttttctatttcttctggaatgtctcctatcaattgattgc |
37139433 |
T |
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| Q |
123 |
ttgatagatcaatactccttaaaatgagttcattattcttgaatattcgtgctgcacctttccacatcaataatgcaaccaaatcatagcctacata |
219 |
Q |
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||||||||||||||||||| |||||||| | |||||||||||||| ||| ||| |||||||||||||| ||||||| |||||| |||||| |||| |
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| T |
37139432 |
ttgatagatcaatactcctcaaaatgagcttattattcttgaatagccgttctgtccctttccacatcaacaatgcaatcaaatcgtagccttcata |
37139336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 37132446 - 37132303
Alignment:
| Q |
23 |
gaagtaatttctccagtcaaattgttgcttgataaattcaatgacaccaatgctatcaagtttcctatttcttctggaatgtctcctgtaaatagattgc |
122 |
Q |
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|||| ||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| |||| | |
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| T |
37132446 |
gaagaaatttctcctgtcaacttgttgcttgataaattcaatgacaccaactctatcaagtttcctatttcttctggaatgtctcctatcaattgatttc |
37132347 |
T |
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| Q |
123 |
ttgatagatcaatactccttaaaatgagttcattattcttgaat |
166 |
Q |
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| T |
37132346 |
ttgatagatcaatactcctcaaaatgagcttattattcttgaat |
37132303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 20759377 - 20759421
Alignment:
| Q |
29 |
atttctccagtcaaattgttgcttgataaattcaatgacaccaat |
73 |
Q |
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||||||||| |||||||||| |||||||||||||| ||||||||| |
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| T |
20759377 |
atttctccactcaaattgttccttgataaattcaaagacaccaat |
20759421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 3022676 - 3022878
Alignment:
| Q |
17 |
atctctgaagtaatttctccagtcaaattgttgcttgataaattcaatgacaccaatgctatcaagtttcctatttcttctggaatgtctcctgtaaata |
116 |
Q |
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|||| ||||||||||| |||| ||||||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||||| | |||| | ||| |
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| T |
3022676 |
atctttgaagtaatttttccattcaaattgttgtttgataaattcaacgacaccaactccatcaagtttcctatttcttctggaatatttcctatcaatt |
3022775 |
T |
|
| Q |
117 |
gattgcttgatagatcaatactccttaaaatgagttcattattcttgaatattcgtgctgcacctttccacatcaataatgcaaccaaatcatagcctac |
216 |
Q |
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|||||||||||||||||||||| || |||||||| | ||||||||||||| |||| ||||||||||||||||||| ||||||| ||||||||||||| | |
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| T |
3022776 |
gattgcttgatagatcaatacttctcaaaatgagcttattattcttgaattgtcgttctgcacctttccacatcaacaatgcaatcaaatcatagccttc |
3022875 |
T |
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| Q |
217 |
ata |
219 |
Q |
| |
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||| |
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| T |
3022876 |
ata |
3022878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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