View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2848_high_17 (Length: 393)

Name: NF2848_high_17
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2848_high_17
NF2848_high_17
[»] chr3 (2 HSPs)
chr3 (1-267)||(52663917-52664182)
chr3 (295-386)||(17058732-17058823)
[»] chr5 (4 HSPs)
chr5 (285-386)||(20351142-20351243)
chr5 (283-386)||(5584085-5584188)
chr5 (294-337)||(21743112-21743155)
chr5 (288-381)||(4852143-4852236)
[»] chr2 (4 HSPs)
chr2 (282-386)||(19933835-19933939)
chr2 (294-337)||(10420956-10420999)
chr2 (294-332)||(6742874-6742912)
chr2 (294-330)||(3981701-3981737)
[»] chr1 (3 HSPs)
chr1 (283-386)||(42312009-42312112)
chr1 (294-383)||(22069896-22069985)
chr1 (294-335)||(42132196-42132237)
[»] chr8 (1 HSPs)
chr8 (289-386)||(39118032-39118129)
[»] scaffold0015 (1 HSPs)
scaffold0015 (294-328)||(52168-52202)
[»] chr6 (1 HSPs)
chr6 (294-386)||(7072512-7072604)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 52664182 - 52663917
Alignment:
Q  1 aattagaaaatcttatataagaggccggctttgtttgagatcatagctaatctaagtttaagacag--gaaaatggcaaaagaaggacaagtgattgaag 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||  |||||||||||||||||||||    
T  52664182 aattagaaaatcttatataagaggccggctttgtttgagatcatagctaatctaagtttaagacagaggaaaatggcggaagaaggacaagtgattgaag 52664083  T
Q  99 tccacagtgttgaggcttggaacgaacaaatcctcaaagggaaatgactccaacaaactggtttgttgtggccattataaagtgtctcaaaacactcctt 198  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||    
T  52664082 tccacagtgttgaggcttggaacgaacaaatcctcaa-gggaaatgactccaacaaactggtttgttgtggccattataaagtgtctcaa--cactcgtt 52663986  T
Q  199 agcatcattaactaatgctcatattattctgtttaagagatcgaatatcattatgttaaatccttctca 267  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52663985 atcatcattaactaatgctcatattattctgtttaagagatcgaatatcattatgttaaatccttctca 52663917  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 386
Target Start/End: Original strand, 17058732 - 17058823
Alignment:
Q  295 ttatagcatatcattaattaaaatgtgttcaatacaatatggtgacgtaactaaaatatggaaactagccgataatgtgaccgcctttgcta 386  Q
    ||||||||| |||||| ||||||||||||||||||||| ||||| | | || ||||| ||||||||||| || ||||||  |||||||||||    
T  17058732 ttatagcatttcattacttaaaatgtgttcaatacaatttggtggcatgaccaaaatttggaaactagctgacaatgtggtcgcctttgcta 17058823  T

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Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 285 - 386
Target Start/End: Original strand, 20351142 - 20351243
Alignment:
Q  285 aggggaaaccttatagcatatcattaattaaaatgtgttcaatacaatatggtgacgtaactaaaatatggaaactagccgataatgtgaccgcctttgc 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||||||||||    
T  20351142 aggggaaaccttatagcatatcattaattaaaatgtgttcaatacaatgtggtggcgtaaccaaaatatggaaactagccgataatgtggccgcctttgc 20351241  T
Q  385 ta 386  Q
    ||    
T  20351242 ta 20351243  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 283 - 386
Target Start/End: Complemental strand, 5584188 - 5584085
Alignment:
Q  283 agaggggaaaccttatagcatatcattaattaaaatgtgttcaatacaatatggtgacgtaactaaaatatggaaactagccgataatgtgaccgccttt 382  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| ||| ||| |||||||||| ||||||||    
T  5584188 agaggggaaatcttatagcatatcattaattaaaatgtgttcaatacaatgtggtggcgtaaccaaaatatgaaaattagtcgataatgtggccgccttt 5584089  T
Q  383 gcta 386  Q
    ||||    
T  5584088 gcta 5584085  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 337
Target Start/End: Complemental strand, 21743155 - 21743112
Alignment:
Q  294 cttatagcatatcattaattaaaatgtgttcaatacaatatggt 337  Q
    |||| |||||||||||||| |||||||||| |||||||||||||    
T  21743155 cttaaagcatatcattaatcaaaatgtgtttaatacaatatggt 21743112  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 381
Target Start/End: Original strand, 4852143 - 4852236
Alignment:
Q  288 ggaaaccttatagcatatcattaattaaaatgtgttcaatacaatatggtgacgt-aactaaaatatggaaactagccgataatgtgaccgcctt 381  Q
    ||||| |||||| ||| |||||||| ||||||||||||||||||| || | | || ||| |||| ||| ||| |||| |||||||||||||||||    
T  4852143 ggaaaacttataacatttcattaatcaaaatgtgttcaatacaatttgat-atgtcaaccaaaacatgaaaattagctgataatgtgaccgcctt 4852236  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 282 - 386
Target Start/End: Original strand, 19933835 - 19933939
Alignment:
Q  282 gagaggggaaaccttatagcatatcattaattaaaatgtgttcaatacaatatggtgacgtaactaaaatatggaaactagccgataatgtgaccgcctt 381  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| | |||||    
T  19933835 gagagggaaaaccttataacatatcattaattaaaatgtgttcaatacaatgtggtggcgtaaccaaaatatggaaactagccgataatgtggcagcctt 19933934  T
Q  382 tgcta 386  Q
    |||||    
T  19933935 tgcta 19933939  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 337
Target Start/End: Original strand, 10420956 - 10420999
Alignment:
Q  294 cttatagcatatcattaattaaaatgtgttcaatacaatatggt 337  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  10420956 cttaaagcatatcattaatcaaaatgtgttcaatacaatatggt 10420999  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 6742874 - 6742912
Alignment:
Q  294 cttatagcatatcattaattaaaatgtgttcaatacaat 332  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  6742874 cttatagcatttcattaattaagatgtgttcaatacaat 6742912  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 3981701 - 3981737
Alignment:
Q  294 cttatagcatatcattaattaaaatgtgttcaataca 330  Q
    |||||||||| |||||||| |||||||||||||||||    
T  3981701 cttatagcatttcattaatcaaaatgtgttcaataca 3981737  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 283 - 386
Target Start/End: Complemental strand, 42312112 - 42312009
Alignment:
Q  283 agaggggaaaccttatagcatatcattaattaaaatgtgttcaatacaatatggtgacgtaactaaaatatggaaactagccgataatgtgaccgccttt 382  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| | |||| |||||||||||||||  |||||||||| ||||||||    
T  42312112 agaggggaaaacttatagaatatcattaattaaaatgtgttcaatacaatgtggtggcataaccaaaatatggaaactaatcgataatgtggccgccttt 42312013  T
Q  383 gcta 386  Q
    ||||    
T  42312012 gcta 42312009  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 383
Target Start/End: Complemental strand, 22069985 - 22069896
Alignment:
Q  294 cttatagcatatcattaattaaaatgtgttcaatacaatatggtgacgtaactaaaatatggaaactagccgataatgtgaccgcctttg 383  Q
    |||||||||| |||||| ||||||||||||||||||||| || |  | | |  ||||| ||||||||||| || |||||| |||||||||    
T  22069985 cttatagcatttcattatttaaaatgtgttcaatacaatttgatagcatgatcaaaatttggaaactagctgacaatgtggccgcctttg 22069896  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 42132237 - 42132196
Alignment:
Q  294 cttatagcatatcattaattaaaatgtgttcaatacaatatg 335  Q
    |||||| ||| |||||| ||||||||||||||||||||||||    
T  42132237 cttatatcatttcattatttaaaatgtgttcaatacaatatg 42132196  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 289 - 386
Target Start/End: Original strand, 39118032 - 39118129
Alignment:
Q  289 gaaaccttatagcatatcattaattaaaatgtgttcaatacaatatggtgacgtaactaaaatatggaaactagccgataatgtgaccgcctttgcta 386  Q
    |||| |||||| ||| |||||||| ||||||||||||||| ||| ||||||  |||| |||||||||||||||   ||||||||||||| ||||||||    
T  39118032 gaaaacttataacatttcattaatcaaaatgtgttcaataaaatttggtgaactaaccaaaatatggaaactaattgataatgtgaccgtctttgcta 39118129  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 328
Target Start/End: Original strand, 52168 - 52202
Alignment:
Q  294 cttatagcatatcattaattaaaatgtgttcaata 328  Q
    ||||||||||||||||| |||||||||||||||||    
T  52168 cttatagcatatcattacttaaaatgtgttcaata 52202  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 386
Target Start/End: Original strand, 7072512 - 7072604
Alignment:
Q  294 cttatagcatatcattaattaaaatgtgttcaatacaatatggtgacgtaactaaaatatggaaactagccgataatgtgaccgcctttgcta 386  Q
    |||||| ||| |||||| |||||||||||| |||||||| |||||   | || ||||| |||||| |||| || ||||||  |||||||||||    
T  7072512 cttataacatttcattatttaaaatgtgtttaatacaatttggtggtatgaccaaaatctggaaattagctgacaatgtggtcgcctttgcta 7072604  T

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