View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_high_19 (Length: 380)
Name: NF2848_high_19
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 7571372 - 7571723
Alignment:
| Q |
19 |
gggattgcgatttcaagtaaaagcagcattggataagaatttggtatatgttacgatgttggcaccaccttttaacacacactcgttctccatgaatcag |
118 |
Q |
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| T |
7571372 |
gggattgcgatttcaagtaaaagcagcattggataagaatttggtatatgttacgatgttggcaccaccttttaacacacactcattctccatgaatcag |
7571471 |
T |
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| Q |
119 |
aggttgttggtgttggagtcaaacaaagtgaatattgtggagggaacaacgtatgatgttcaggttactatgccgggttcacctattcttgcacctcccg |
218 |
Q |
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| T |
7571472 |
aggttgttggtgttggagtcaaacaaagtgaatattgtggagggaacaacgtatgatgttcaggttactatgccgggttcacctattcttgcgcctcctg |
7571571 |
T |
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| Q |
219 |
gattttatctactatttgtggttcataaagaaattcctagtgaaggaatttggatacaaatactttaattttcaaatgcaactgtgtggtaaataataaa |
318 |
Q |
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| T |
7571572 |
gattttatctactatttgtggttcataaagaaattcctagtgaaggaatttggatacaaatactttaattttcaaatgcaactgtgtggtaaataataaa |
7571671 |
T |
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| Q |
319 |
tttgcttttatattatcaaagaaagtttgtttattaccctctctaatctctg |
370 |
Q |
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| T |
7571672 |
tttgcttttatattatcaaagaaagtttgtttattaccctctctaatctctg |
7571723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 291
Target Start/End: Original strand, 531610 - 531815
Alignment:
| Q |
86 |
ccttttaacacacactcgttctccatgaatcagaggttgttggtgttggagtcaaacaaagtgaatattgtggagggaacaacgtatgatgttcaggtta |
185 |
Q |
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| T |
531610 |
ccttttaatacacattcattctcaatgaatcaaaggttgttggtgttggagcaaaataaagtaaatcgtgtgaacggaacaacatatgaaattgaagtta |
531709 |
T |
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| Q |
186 |
ctatgccgggttcacctattcttgcacctcccggattttatctactatttgtggttcataaagaaattcctagtgaaggaatttggatacaaatacttta |
285 |
Q |
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| T |
531710 |
ccgtgccgaattcacctattcttgcacctccaggtttttatctactatttgtggtaaacgcacaaattcctagcgagggtatttgggtacatatactttg |
531809 |
T |
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| Q |
286 |
attttc |
291 |
Q |
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|||||| |
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| T |
531810 |
attttc |
531815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 293
Target Start/End: Original strand, 52914701 - 52914798
Alignment:
| Q |
196 |
ttcacctattcttgcacctcccggattttatctactatttgtggttcataaagaaattcctagtgaaggaatttggatacaaatactttaattttcaa |
293 |
Q |
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|||||| |||||||||||||| |||| |||| ||||||||||||| ||| ||||| |||| ||| | || ||||| | ||| |||| |||||||||| |
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| T |
52914701 |
ttcacccattcttgcacctccgggatattatttactatttgtggtccatcaagaagttccaagtcagggtgtttgggtccaactactctaattttcaa |
52914798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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