View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2848_high_26 (Length: 360)

Name: NF2848_high_26
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2848_high_26
NF2848_high_26
[»] chr6 (3 HSPs)
chr6 (16-357)||(33943176-33943516)
chr6 (22-105)||(8147615-8147696)
chr6 (56-164)||(9093574-9093681)
[»] chr4 (6 HSPs)
chr4 (87-249)||(17822797-17822959)
chr4 (59-124)||(18425761-18425825)
chr4 (78-178)||(55414424-55414523)
chr4 (56-123)||(41336706-41336772)
chr4 (55-124)||(3155547-3155616)
chr4 (185-249)||(55437150-55437214)
[»] chr3 (6 HSPs)
chr3 (23-177)||(20880390-20880541)
chr3 (201-240)||(11592027-11592066)
chr3 (16-99)||(46778309-46778391)
chr3 (217-249)||(9832687-9832719)
chr3 (197-249)||(25447177-25447229)
chr3 (224-252)||(40294795-40294823)
[»] chr5 (5 HSPs)
chr5 (56-115)||(35446000-35446059)
chr5 (55-175)||(4014431-4014550)
chr5 (217-249)||(34907721-34907753)
chr5 (143-178)||(40426796-40426831)
chr5 (87-175)||(39105440-39105527)
[»] chr7 (1 HSPs)
chr7 (72-177)||(40252112-40252216)
[»] chr8 (5 HSPs)
chr8 (197-249)||(1096576-1096628)
chr8 (95-178)||(30251458-30251540)
chr8 (199-249)||(38750445-38750495)
chr8 (73-174)||(18930664-18930764)
chr8 (61-98)||(31716314-31716351)
[»] chr1 (1 HSPs)
chr1 (78-178)||(24915055-24915154)
[»] chr2 (5 HSPs)
chr2 (21-176)||(12464479-12464632)
chr2 (22-172)||(33319822-33319971)
chr2 (56-178)||(45229457-45229577)
chr2 (71-175)||(3611186-3611289)
chr2 (21-105)||(42659227-42659310)


Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 33943176 - 33943516
Alignment:
Q  16 caaatacttatcatgataagcgcttaagtaaaagcaatatataagctattttaagagcaaatgataaattaaagttaaattgttattgtacacgttataa 115  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33943176 caaatacttatcatgataagcgcttaagtaaaagcaatat--aagctattttaagagcaaatgataaattaaagttaaattgttattgtacatgttataa 33943273  T
Q  116 actgttttcgataagttaccttagagtacttaagaaaataagcttaaaaaagcttatgaaaaacatcttagttgttatcaaatgttctttcaaataatct 215  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33943274 actgttttcgataagttaccttagattacttaagaaaataagcttagaaaagcttatgaaaaacatcttagttgttttcaaatgttctttcaaataatct 33943373  T
Q  216 tacaaaacttatgtcaataaataaactcaaataaatc-tatacaaatagatcctataagtcttaaagacaacttatcaaaatatttatatttatctatat 314  Q
    ||||||||||||||||||||||||||| |||||| || |||  ||||||| ||||||| |||||||||||||||||||||||||||| |||||| | | |    
T  33943374 tacaaaacttatgtcaataaataaacttaaataagtcatat-taaatagaccctataaatcttaaagacaacttatcaaaatatttacatttatttctct 33943472  T
Q  315 tcaaagatact-actagactccaacccagaacttcaatattaaa 357  Q
    ||||||||||| ||||||||||||| || |||||||||||||||    
T  33943473 tcaaagatactaactagactccaactcataacttcaatattaaa 33943516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 8147615 - 8147696
Alignment:
Q  22 cttatcatgataagcgcttaagtaaaagcaatatataagctattttaagagcaaatgataaattaaagttaaattgttattgta 105  Q
    |||||||||||||||||||||| | ||||  || |||||||||||| | |||||| |||||| ||||||| ||||||| |||||    
T  8147615 cttatcatgataagcgcttaagcataagc--tacataagctatttttatagcaaaagataaaataaagttgaattgtttttgta 8147696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 9093681 - 9093574
Alignment:
Q  56 ataagctattttaagagcaaatgataaattaaagttaaattgttattgtacacgttataaactgttttcgataagttaccttagagtacttaagaaaata 155  Q
    |||||||||||  | | |||| |||||| ||||||||||||||| | ||| | | ||||| |||||||| ||||| |  ||||||| |||||||||||||    
T  9093681 ataagctatttctatatcaaaagataaaataaagttaaattgttttcgtataagctataagctgttttc-ataagctgtcttagagaacttaagaaaata 9093583  T
Q  156 agcttaaaa 164  Q
    |||| ||||    
T  9093582 agctgaaaa 9093574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 249
Target Start/End: Complemental strand, 17822959 - 17822797
Alignment:
Q  87 aagttaaattgttattgtacacgttataaactgttttcgataagttaccttagagtacttaagaaaataagcttaaaaaagcttatgaaaaacatc-tta 185  Q
    |||||||||||||||| || | | |||||  ||||||| ||||| || ||| ||| ||||| ||||||||||| ||||||||||||||||||  || | |    
T  17822959 aagttaaattgttattttatatgctataagttgttttc-ataagctatcttggagaacttatgaaaataagctaaaaaaagcttatgaaaaatgtcataa 17822861  T
Q  186 gttgttatcaaatgttctttcaaataatcttacaaaacttatgtcaataaataaactcaaataa 249  Q
    | |||| ||| |||||||   ||||| ||| ||| ||||||||||| || |||| |||||||||    
T  17822860 gctgttttcatatgttctcctaaatagtctcacagaacttatgtcagtagataagctcaaataa 17822797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 18425761 - 18425825
Alignment:
Q  59 agctattttaagagcaaatgataaattaaagttaaattgttattgtacacgttataaactgttttc 124  Q
    |||||||||| | ||||||| |||| ||||||||||||||| ||||||| |||||||| |||||||    
T  18425761 agctattttatg-gcaaatggtaaaataaagttaaattgtttttgtacatgttataaaatgttttc 18425825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 55414523 - 55414424
Alignment:
Q  78 gataaattaaagttaaattgttattgtacacgttataaactgttttcgataagttaccttagagtacttaagaaaataagcttaaaaaagcttatgaaaa 177  Q
    |||||| ||||||||| || || ||| | | | |||||| ||||||| |||||||| ||| ||| ||||| ||||||||| | |||||||||||||||||    
T  55414523 gataaaataaagttaatttttttttgcatatgctataaattgttttc-ataagttatcttggagaacttatgaaaataagttgaaaaaagcttatgaaaa 55414425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 41336706 - 41336772
Alignment:
Q  56 ataagctattttaagagcaaatgataaattaaagttaaattgttattgtacacgttataaactgtttt 123  Q
    |||||||||||| | |||||| |||||| ||||||||||||||| ||||| | |||||||| ||||||    
T  41336706 ataagctatttttatagcaaa-gataaaataaagttaaattgtttttgtatatgttataaattgtttt 41336772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 3155547 - 3155616
Alignment:
Q  55 tataagctattttaagagcaaatgataaattaaagttaaattgttattgtacacgttataaactgttttc 124  Q
    ||||||||||||  | |||||| |||||| ||||||||||||||| ||||||| | || || ||||||||    
T  3155547 tataagctatttctatagcaaaagataaaataaagttaaattgtttttgtacaagctacaagctgttttc 3155616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 55437150 - 55437214
Alignment:
Q  185 agttgttatcaaatgttctttcaaataatcttacaaaacttatgtcaataaataaactcaaataa 249  Q
    ||||||| ||| | ||||||||||| ||| | |||||||||||| || || ||||||||||||||    
T  55437150 agttgttttcataagttctttcaaacaatttcacaaaacttatggcagtagataaactcaaataa 55437214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 20880390 - 20880541
Alignment:
Q  23 ttatcatgataagcgcttaagtaaaagcaatatataagctattttaagagcaaatgataaattaaagttaaattgttattgtacacgttataaactgttt 122  Q
    ||||||| ||||| ||||| ||| ||||  || |||||||||||| | |||||||||||||  || ||||||||||| ||||| | | ||||||||||||    
T  20880390 ttatcataataagtgcttatgtataagct-tacataagctatttttatagcaaatgataaaacaa-gttaaattgtttttgtatatgctataaactgttt 20880487  T
Q  123 tcgataagttaccttagagtacttaagaaaataagcttaaaaaagcttatgaaaa 177  Q
    |  | ||| ||  || ||| ||||| ||||||||||| |||||||||||||||||    
T  20880488 t-taaaagctatattggagaacttatgaaaataagctcaaaaaagcttatgaaaa 20880541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 11592027 - 11592066
Alignment:
Q  201 tctttcaaataatcttacaaaacttatgtcaataaataaa 240  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  11592027 tcttttaaatagtcttacaaaacttatgtcaataaataaa 11592066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 46778391 - 46778309
Alignment:
Q  16 caaatacttatcatgataagcgcttaagtaaaagcaatatataagctattttaagagcaaatgataaattaaagttaaattgtt 99  Q
    |||| ||||||||||||||||||||| |||  |||  ||||||||||||||  | |||||  |||||| |||||||||||||||    
T  46778391 caaacacttatcatgataagcgcttatgtatcagct-tatataagctatttctatagcaagagataaaataaagttaaattgtt 46778309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 9832719 - 9832687
Alignment:
Q  217 acaaaacttatgtcaataaataaactcaaataa 249  Q
    ||||||||||||||||||||||| |||||||||    
T  9832719 acaaaacttatgtcaataaataagctcaaataa 9832687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 25447229 - 25447177
Alignment:
Q  197 atgttctttcaaataatcttacaaaacttatgtcaataaataaactcaaataa 249  Q
    |||||||| |||| | ||| ||||||||||||||| || ||||||||||||||    
T  25447229 atgttcttgcaaacagtctcacaaaacttatgtcagtagataaactcaaataa 25447177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 40294795 - 40294823
Alignment:
Q  224 ttatgtcaataaataaactcaaataaatc 252  Q
    |||||||||||||||||||||||||||||    
T  40294795 ttatgtcaataaataaactcaaataaatc 40294823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 35446000 - 35446059
Alignment:
Q  56 ataagctattttaagagcaaatgataaattaaagttaaattgttattgtacacgttataa 115  Q
    |||||||||||| | ||||||||||||| ||||||||||||||| ||||| ||| |||||    
T  35446000 ataagctatttttatagcaaatgataaaataaagttaaattgtttttgtatacgctataa 35446059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 175
Target Start/End: Complemental strand, 4014550 - 4014431
Alignment:
Q  55 tataagctattttaagagcaaatgataaattaaagttaaattgttattgtacacgttataaactgttttcgataagttaccttagagtacttaagaaaat 154  Q
    ||||||||||||  | |||||| |||||| |||||||| |||||| ||| | |  | |||| |||||||| ||||| || ||| ||| ||||| ||||||    
T  4014550 tataagctatttctatagcaaaagataaaataaagttagattgtttttggaaaaatgataagctgttttc-ataagctatcttggagaacttatgaaaat 4014452  T
Q  155 aagcttaaaaaagcttatgaa 175  Q
    ||||| |||| ||||||||||    
T  4014451 aagctgaaaacagcttatgaa 4014431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 34907753 - 34907721
Alignment:
Q  217 acaaaacttatgtcaataaataaactcaaataa 249  Q
    |||||||||||||||||||||||||||||||||    
T  34907753 acaaaacttatgtcaataaataaactcaaataa 34907721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 40426796 - 40426831
Alignment:
Q  143 acttaagaaaataagcttaaaaaagcttatgaaaaa 178  Q
    ||||| ||||||||||||||||||||||||||||||    
T  40426796 acttacgaaaataagcttaaaaaagcttatgaaaaa 40426831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 39105440 - 39105527
Alignment:
Q  87 aagttaaattgttattgtacacgttataaactgttttcgataagttaccttagagtacttaagaaaataagcttaaaaaagcttatgaa 175  Q
    ||||||||||||| | ||| | | ||||| |||||||| ||||| || ||| ||| ||||| ||||||||||| |||| ||||||||||    
T  39105440 aagttaaattgttttcgtataagctataatctgttttc-ataagctatcttggagaacttatgaaaataagctaaaaatagcttatgaa 39105527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 40252216 - 40252112
Alignment:
Q  72 gcaaatgataaattaaagttaaattgttattgtacacgttataaactgttttcgataagttaccttagagtacttaagaaaataagcttaaaaaagctta 171  Q
    ||||||||||||  |||||||||| ||| ||||| | ||||||| || ||||| |||||||| ||| ||| ||||| ||||||||||| | | |||||||    
T  40252216 gcaaatgataaaacaaagttaaatcgtttttgtatatgttataagctcttttc-ataagttatcttggagaacttatgaaaataagctgatagaagctta 40252118  T
Q  172 tgaaaa 177  Q
     |||||    
T  40252117 cgaaaa 40252112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 1096576 - 1096628
Alignment:
Q  197 atgttctttcaaataatcttacaaaacttatgtcaataaataaactcaaataa 249  Q
    |||||||  |||| ||||| ||||||||||||||| |||||||||||||||||    
T  1096576 atgttctcccaaaaaatctcacaaaacttatgtcactaaataaactcaaataa 1096628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 30251540 - 30251458
Alignment:
Q  95 ttgttattgtacacgttataaactgttttcgataagttaccttagagtacttaagaaaataagcttaaaaaagcttatgaaaaa 178  Q
    ||||||||||| | ||||||| |||||||| ||||| || ||| ||  ||||| |||||||||||  |||||||||||||||||    
T  30251540 ttgttattgtatatgttataagctgttttc-ataagctatcttggaccacttatgaaaataagctgtaaaaagcttatgaaaaa 30251458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 38750445 - 38750495
Alignment:
Q  199 gttctttcaaataatcttacaaaacttatgtcaataaataaactcaaataa 249  Q
    ||||||||||||||||| ||||||||||||  | || ||||||||||||||    
T  38750445 gttctttcaaataatctcacaaaacttatgcaagtagataaactcaaataa 38750495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 18930664 - 18930764
Alignment:
Q  73 caaatgataaattaaagttaaattgttattgtacacgttataaactgttttcgataagttaccttagagtacttaagaaaataagcttaaaaaagcttat 172  Q
    |||| ||||||| |||||||||||||||||||| | | | ||||||| |||| ||||| || ||| ||| ||||| || |||||| | |||| |||||||    
T  18930664 caaaagataaatgaaagttaaattgttattgtatatgctgtaaactg-tttcaataagctatcttcgagaacttatgagaataagatgaaaacagcttat 18930762  T
Q  173 ga 174  Q
    ||    
T  18930763 ga 18930764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 31716351 - 31716314
Alignment:
Q  61 ctattttaagagcaaatgataaattaaagttaaattgt 98  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  31716351 ctattttaacagcaaatgataaaataaagttaaattgt 31716314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 24915154 - 24915055
Alignment:
Q  78 gataaattaaagttaaattgttattgtacacgttataaactgttttcgataagttaccttagagtacttaagaaaataagcttaaaaaagcttatgaaaa 177  Q
    |||||| ||||||||||||||| ||||| | | ||||| |||||||| ||||| |  ||| ||| ||||  ||||||||| | |||||||||||||||||    
T  24915154 gataaaataaagttaaattgtttttgtatatgctataagctgttttc-ataagctgtcttggagaacttgtgaaaataagttgaaaaaagcttatgaaaa 24915056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 12464632 - 12464479
Alignment:
Q  21 acttatcatgataagcgcttaagtaaaagcaatatataagctattttaagagcaaatgataaattaaagttaaattgttattgtacacgttataaactgt 120  Q
    ||||||||||||||| || || ||| ||||  || |||||||||||    || ||| |||||| ||||||||||||||| ||||| | | ||||| || |    
T  12464632 acttatcatgataagtgcatatgtagaagct-tacataagctatttctgtagaaaaagataaaataaagttaaattgtttttgtatatgctataagctat 12464534  T
Q  121 tttcgataagttaccttagagtacttaagaaaataagcttaaaaaagcttatgaaa 176  Q
    |||| ||||| || ||| ||| ||||  ||||||||||| |||||||||| |||||    
T  12464533 tttc-ataagctatcttggagaacttgtgaaaataagctgaaaaaagcttgtgaaa 12464479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 33319971 - 33319822
Alignment:
Q  22 cttatcatgataagcgcttaagtaaaagcaatatataagctattttaagagcaaatgataa-attaaagttaaattgttattgtacacgttataaactgt 120  Q
    |||||| |||||| |||||| |||||||   || |||| ||||||| | || ||||||||| || ||||||||| |||| ||||| |   ||||||||||    
T  33319971 cttatcctgataatcgcttatgtaaaagtt-tacataaactatttttatagtaaatgataacataaaagttaaactgtttttgtatatactataaactgt 33319873  T
Q  121 tttcgataagttaccttagagtacttaagaaaataagcttaaaaaagcttat 172  Q
    |||| ||||  || ||| ||| ||||| ||||||||||| ||||||||||||    
T  33319872 tttc-ataaactatcttggagaacttatgaaaataagctgaaaaaagcttat 33319822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 45229457 - 45229577
Alignment:
Q  56 ataagctattttaagagcaaatgataaattaaagttaaattgttattgtacacgttataaactgttttcgataagttaccttagagtacttaagaaaata 155  Q
    |||||||||||  | |||||| |||||| | | ||||||||||| ||||| | ||||| |  ||||||| ||||| || ||| ||| ||||| |||||||    
T  45229457 ataagctatttctatagcaaacgataaaatgaggttaaattgtttttgtatatgttatcat-tgttttc-ataagctatcttcgagaacttatgaaaata 45229554  T
Q  156 agcttaaaaaagcttatgaaaaa 178  Q
    |||| ||||||||| ||||||||    
T  45229555 agctgaaaaaagctaatgaaaaa 45229577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 3611186 - 3611289
Alignment:
Q  71 agcaaatgataaattaaagttaaattgttattgtacacgttataaactgttttcgataagttaccttagagtacttaagaaaataagcttaaaaaagctt 170  Q
    |||||| | |||| ||||||||||||||| ||||| |  ||||| ||||||||| | ||| || ||| ||| ||||| ||||||||||| |||| || ||    
T  3611186 agcaaaaggtaaaataaagttaaattgtttttgtatagtttatagactgttttc-acaagctatcttggagaacttatgaaaataagctaaaaacagttt 3611284  T
Q  171 atgaa 175  Q
    |||||    
T  3611285 atgaa 3611289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 42659310 - 42659227
Alignment:
Q  21 acttatcatgataagcgcttaagtaaaagcaatatataagctattttaagagcaaatgataaattaaagttaaattgttattgta 105  Q
    ||||||||||||||||||||| ||| ||||  || |||||||||||| |  | ||||| |||| |||||| |||||||| |||||    
T  42659310 acttatcatgataagcgcttatgtataagc-ttacataagctatttttatggaaaatggtaaaataaagtgaaattgtttttgta 42659227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University