View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_high_29 (Length: 339)
Name: NF2848_high_29
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_high_29 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 961792 - 962113
Alignment:
| Q |
19 |
agacatcacattccttttgtgtccattccacattgtgaacatgaagactaaactagggtacctatttttactatttcactcccttatacgcatttaatgt |
118 |
Q |
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| T |
961792 |
agacatcacattccttttgtgtccattccacattgtgaacatgaagactaaactagggtacctatttttactatttcactcccttatacacatttaatgt |
961891 |
T |
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| Q |
119 |
gaacaccagttaaatttgcacaatttcataattaattaaaaataaccaaagatagtatatggtgtaagttgtattattaagcatgttgacaactaagtaa |
218 |
Q |
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| T |
961892 |
gaacaccagttaaatttgcacaatttcataattaattaaaaataaccaaagatagtatatggtggaagttgtattattaagcatgaagacagctaagtga |
961991 |
T |
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| Q |
219 |
ttgagttcaactgactaacaaacttcagttaagtacgaatcatttgaaagaatctgagtttaaattctgactgaaacaatcattaatcagactttaa-tt |
317 |
Q |
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| T |
961992 |
ttgagtttaactgaccaacgaacttcagttaagtatgaatcatttggaagaatttgagtttaaattctgactaaaacaataattaatcagactttaattt |
962091 |
T |
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| Q |
318 |
acttttcggtcgaacttcatat |
339 |
Q |
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| T |
962092 |
atttttcagtcgaacttcatat |
962113 |
T |
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