View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_high_30 (Length: 339)
Name: NF2848_high_30
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 39119850 - 39119539
Alignment:
| Q |
1 |
agttttatttcccccagaaagtaagtaagnnnnnnnnnnnnngtgagatcagtggaatggaacggaattgtatgtatgaggaaaggaaagttcgttttgt |
100 |
Q |
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| T |
39119850 |
agttttatttcccccagaaagtaagtaagaaaaaaagaaaaagtgagatcagtggaatggaacggaattgtatg----aggaatggaaagttcgttttgt |
39119755 |
T |
|
| Q |
101 |
ttcgaaatgggtcccattctaaagccacgtggtattaaattaactacannnnnnnnnnnnnnnnnattcataccaaccaaccgaactaccggtaccatct |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
39119754 |
ttcgaaatgggtcccattgtaaagccacgtggtattaaattaactacactctctctctctctctcattcataccaaccaactgaactaccggtaccatct |
39119655 |
T |
|
| Q |
201 |
ctaatttaatttaattcattcattttttaaaaatgaattacaccttcatacattatacttttgttttgtcatttttgtggatcctagttggttccagaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39119654 |
ctaatttaatttaattcattcattttttaaaaatgaattacaccttcatacattatacttttgttttgtcatttttgtggatcctagttggttccagaat |
39119555 |
T |
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| Q |
301 |
ttgcaatattcaactt |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
39119554 |
ttgcaatattcaactt |
39119539 |
T |
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