View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_high_31 (Length: 337)
Name: NF2848_high_31
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 53 - 318
Target Start/End: Complemental strand, 28860115 - 28859850
Alignment:
| Q |
53 |
agaactatgatattcttctttcaaaacaataaagaactatgatattcttatgaatgaactaacgcacattaattcactttgcaaaggcacaagtacaaaa |
152 |
Q |
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| T |
28860115 |
agaactatgatattcttctttcaaaacaataaagaactatgatattcttatgaatgaactaacgcacattaattcactttgcaaagacacaagtacaaaa |
28860016 |
T |
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| Q |
153 |
gaaattaaagatccaagttacaaattggtatgaattttcgctgtcccataggatacaaagattcttattaggtgaggtacaaaaataaatacattaatta |
252 |
Q |
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| T |
28860015 |
gaaattaaagatccaagttacaaattggtatgaatttttgctgtcccataggatacaaagattcttattaggtgaggtacaaaaataaatacattaatta |
28859916 |
T |
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| Q |
253 |
agataaagaaaaaccatgaagacaagcacaaatgttctataaatccagttgtatgatattcgatca |
318 |
Q |
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| T |
28859915 |
agataaagaaaaaccatgaagacaagcacaaatgttctataaatccagttgtatgatattcgatca |
28859850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 28860188 - 28860139
Alignment:
| Q |
20 |
tatgtgtatctaattattcatttacttgaaatcagaactatgatattctt |
69 |
Q |
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| T |
28860188 |
tatgtgtatctaattattcatttacttgaaatcagaactatgatattctt |
28860139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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