View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_high_35 (Length: 327)
Name: NF2848_high_35
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 31046950 - 31047242
Alignment:
| Q |
1 |
aaaatgcacgtaaatagagattcactatactaacgacgtcgttttcaattttgcgttttcggttttccgcatacatcaacttcacgtattcgttcaaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31046950 |
aaaatgcacgtaaatagagattcactatactaacgacgtcgttttcaattttgcgttttcggttttccgcatacatcaacttcacgtatttgttcaaaaa |
31047049 |
T |
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| Q |
101 |
cttcaaatcaacatcacgaaatttcaattcctaaaagctaaacacaacatgcaaaaatcaatcgattttacagatctaaatcaaaatcaataatcacaca |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31047050 |
cttcaaatcaacatcacgaaatttcaattccaaaaagctaaacacaacatgcaaaaatcaatcgattttacagatctaaatcaaaatcaataatcacaca |
31047149 |
T |
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| Q |
201 |
acagcactaacatacaaaattcaagaaaagagcgagaaaactaacctgaacgatgcgaattttcaccaagtgttgatgttgatgctgatgctg |
293 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31047150 |
acaacactaacatacaaaattcaagaaaagagcgagaaaactaacctgaacgatgcgaattttcaccaagtgttgatgttgatgctgatgctg |
31047242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 286 - 314
Target Start/End: Original strand, 31047229 - 31047257
Alignment:
| Q |
286 |
tgatgctgatgctgctattgcttctttct |
314 |
Q |
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| T |
31047229 |
tgatgctgatgctgctattgcttctttct |
31047257 |
T |
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