View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2848_high_41 (Length: 308)
Name: NF2848_high_41
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_high_41 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 290
Target Start/End: Original strand, 26417975 - 26418259
Alignment:
| Q |
6 |
ttctcattcttctggtttttagggttggaaatcaatgaaaggccattcaagcgtcctctcttggatttcggaaacctatccatctctcaatctcaatctt |
105 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26417975 |
ttctcattcttctgttttttagggttggaaatcaatgaaaggccattcaagcgccctctcttggatttcggaaacctatccatctctcagtctcaatctt |
26418074 |
T |
|
| Q |
106 |
cttctcaaaacggtatgttcgtatctctatccttgtttcttctgttcattatttgtgttttctgagacttactaaaagacagagtttctgattactcggt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26418075 |
cttctcaaaacggtatgttcgtatctctatccttgtttcttctgttcattatttgtgttttctgagacttattaaaagacagagtttctgattactcggt |
26418174 |
T |
|
| Q |
206 |
gcatacataaagcatcatagcacgggtctatagtgtgtaagatattgtaactatgaagcacggatactctttggattaagcgtgt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || |||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
26418175 |
gcatacataaagcatcatagcacgggtctatagtttttatgatattgtaattatgaagcacaaatactctttggattaagcgtgt |
26418259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 12278482 - 12278387
Alignment:
| Q |
25 |
tagggttggaaatcaatgaaaggccattcaagcgtcctctcttggatttcggaaacctatccatctctcaatctcaatcttcttctcaaaacggtatgt |
123 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||| |||||||| ||||| ||||||||||| | ||| || ||||||||||||||||||| |
|
|
| T |
12278482 |
tagggttggaaatcaatgagaggccattcaagcgttctctattggattttggaaatctatccatctccgattct---tcatcttctcaaaacggtatgt |
12278387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 12276659 - 12276599
Alignment:
| Q |
25 |
tagggttggaaatcaatgaaaggccattcaagcgtcctctcttggatttcggaaacctatc |
85 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
12276659 |
tagggttggaaatcaatgagaggccattgaagcgtcctctcttggattttggaaatctatc |
12276599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 12288831 - 12288887
Alignment:
| Q |
23 |
tttagggttggaaatcaatgaaaggccattcaagcgtcctctcttggatttcggaaa |
79 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||||||| | || ||||||||||| |
|
|
| T |
12288831 |
tttagggttggaaatcaacgagagaccattcaagcgtccttttttcgatttcggaaa |
12288887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Complemental strand, 25482021 - 25481987
Alignment:
| Q |
256 |
ctatgaagcacggatactctttggattaagcgtgt |
290 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25482021 |
ctatgaagcacggatactctttgaattaagcgtgt |
25481987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 12612095 - 12612066
Alignment:
| Q |
257 |
tatgaagcacggatactctttggattaagc |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12612095 |
tatgaagcacggatactctttggattaagc |
12612066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University