View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_high_46 (Length: 296)
Name: NF2848_high_46
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 4314771 - 4314505
Alignment:
| Q |
13 |
aatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttgga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314771 |
aatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttgga |
4314672 |
T |
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| Q |
113 |
attcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaagg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4314671 |
attcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttgtatggtacaaacttttcaagg |
4314572 |
T |
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| Q |
213 |
ttactctcttgagcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttct |
279 |
Q |
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| T |
4314571 |
ttactctcttgagcaattgtctgatgaagattgttggtcagtgtttggaaatcatgcatgcctttct |
4314505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 4305909 - 4305643
Alignment:
| Q |
13 |
aatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttgga |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |
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| T |
4305909 |
aatatagagttgcttcatctagatttgaaggaaaaactggccggaaagaagttcttaattgttttggatgacgtttggactgaggattatgatgcttgga |
4305810 |
T |
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| Q |
113 |
attcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaagg |
212 |
Q |
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| T |
4305809 |
aatcccttttaaggcctcttcagtacagtgacaaaggaagtaaaattcttgtaacaacccgtattaaaaaagttgcttctatgctacaaacttttcaagg |
4305710 |
T |
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| Q |
213 |
ttactctcttgagcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttct |
279 |
Q |
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| T |
4305709 |
ttactctcttgagcaattgtctgatgaagattgttggtctgtgtttgaaaaccatgcatgcctttct |
4305643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 4253720 - 4253981
Alignment:
| Q |
19 |
gagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcac |
118 |
Q |
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| T |
4253720 |
gagttgcttcatcgtgatttgaaggaaaaactgactggaaaaaagttcttaattgttttggatgatgtatggaccgaggattatgacagctggaattctc |
4253819 |
T |
|
| Q |
119 |
ttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggtt-act |
217 |
Q |
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||||||| |||||||| | || | | ||||| |||||||||||||||||| || | | ||||||||||||||||||| |||||||||||||||| | | |
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| T |
4253820 |
ttttaaggcctcttcaatacggggctaagggaaataaaattcttgtaacaactcgtattgaaaaagttgcttctatggtccaaacttttcaaggttaatt |
4253919 |
T |
|
| Q |
218 |
ctcttgagcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttct |
279 |
Q |
| |
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||||||| |||| |||||||||||||||||||| ||||||| || ||||||||||||||| |
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| T |
4253920 |
ctcttgatgaattatctgatgaagattgttggtcggtgtttgcaaaccatgcatgcctttct |
4253981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 34 - 278
Target Start/End: Original strand, 4246617 - 4246861
Alignment:
| Q |
34 |
gatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaagacctcttc |
133 |
Q |
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|||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||| | |||||||| || ||||||||| ||| | | ||||||| |
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| T |
4246617 |
gatttgaaggaaaaactgactggaaaaaagttcttgattgttttggacgatgtttggatcaaggattataacagttggaattctcttatgatgcctcttc |
4246716 |
T |
|
| Q |
134 |
atgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttactctcttgagcaattgtc |
233 |
Q |
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| | || | | |||||| ||||||||||||||||| || ||| | ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |
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| T |
4246717 |
aatacggagctaagggaagcaaaattcttgtaacaacgcgtagtgataaagttgcttctatggtccaaacttttcaaggttattctcttgagaaattgtc |
4246816 |
T |
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| Q |
234 |
tgatgaagattgttggtcagtgtttggaagtcatgcatgcctttc |
278 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||| |
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| T |
4246817 |
tgatgaagattgttggtcagtgtttgcaatccatgcatgcctttc |
4246861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 41933158 - 41933404
Alignment:
| Q |
13 |
aatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttgga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||| |
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| T |
41933158 |
aatatagagttgcttcatctagatttgaaggaaaaactgtccggaaagaagttcttaattgttttagatgatttctggaccgaggattatgatgcttgga |
41933257 |
T |
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| Q |
113 |
attcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaagg |
212 |
Q |
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|||| |||||||| |||||||| |||| |||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
41933258 |
attctcttttaaggcctcttcaatatggtaccaagggaagtaaaattcttgtaacaacccatattaaaaaagttgcttctatggtacaaacttttcaagg |
41933357 |
T |
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| Q |
213 |
ttactctcttgagcaattgtctgatgaagattgttggtcagtgtttg |
259 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
41933358 |
ttactctcttgagcaattgtctgaagaagattgttggtccgtgtttg |
41933404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 279
Target Start/End: Complemental strand, 34802834 - 34802581
Alignment:
| Q |
26 |
ttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaag |
125 |
Q |
| |
|
|||||| |||||||||||| || |||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||| ||| |||| |
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| T |
34802834 |
ttcatcaagatttgaaggagaagttggcgggaaagaagttcttaattgtattggatgatgtctggactgaggattatgacagttggaatattcttataag |
34802735 |
T |
|
| Q |
126 |
acctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttactctcttgag |
225 |
Q |
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||| |||| || || | |||||||||||||||||||||||| | | | |||| |||||| ||||||| |||||||||||| |||| |||| || |
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| T |
34802734 |
gccttttcaatgcggaactaaaggaagtaaaattcttgtaacaacctgtattgaaaatgttgctactatggtccaaacttttcaaccttaccatcttaag |
34802635 |
T |
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| Q |
226 |
caattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttct |
279 |
Q |
| |
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||||||||||||||||||||||||||| || | || |||||||| |||||| |
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|
| T |
34802634 |
atattgtctgatgaagattgttggtcagttttcgcaaaccatgcatgtctttct |
34802581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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