View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_high_51 (Length: 275)
Name: NF2848_high_51
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_high_51 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 12995214 - 12994963
Alignment:
| Q |
17 |
agttgtctcattaacaacttcaattcttgagcnnnnnnnaactttcttaaccgtgtcttcaatgttcctacctgctttagagttcatttgttaagtacta |
116 |
Q |
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| T |
12995214 |
agttgtctcattaacaacttcaattcttgagctttttttaactttcttaaccgtgtcttcaatgttcctacctgcttttgagttcatttgttaagtacta |
12995115 |
T |
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| Q |
117 |
g---tataaaaaagaagaagtgattttactaaaaattatttgatattaaaaaggaaatcaaatgaagttctcacctgggaatttttgcttaagagtgtca |
213 |
Q |
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|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12995114 |
aaaatactaaaaaaaagaagtgattttactaaaaattatttgatattaaaaaggaaatcaaatgaagttctcacctgggaatttttgcttaagagtgtca |
12995015 |
T |
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| Q |
214 |
atatctatactcatttttctcttcccatttgttatcatttgagcttcctttg |
265 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12995014 |
atatctatactcatttttctcttcccatttgtcatcatttgagcttcctttg |
12994963 |
T |
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