View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2848_high_53 (Length: 266)
Name: NF2848_high_53
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_high_53 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 3080661 - 3080419
Alignment:
| Q |
15 |
gaaaattcgtgcaaatttcccaattcatggatgtcttggtgttattcatatgtatgcaggtatgataaataagtcttctaaagagttagatcaattaaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3080661 |
gaaaattcgtgcaaatttcccaattcatggatgtcttggtgttattcatatgtatgcaggtatgataaataagtcttctaaagagttagatcaattaaaa |
3080562 |
T |
|
| Q |
115 |
tggctattagcttattgtaagcaaaacaaccatttacaacaacaaaatctttatttctccatagcttctactagttttcaagtgtttaataattatggtg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3080561 |
tggctattagcttattgtaagcaaaacaaccatttacaacaacaaaatctttattcctccataccttctactagttttcaagtgtttaacaattatggtg |
3080462 |
T |
|
| Q |
215 |
atgttggtaattattatcacaatagtgaaaataatatgatgat |
257 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3080461 |
atgttggtaattattatcaaaatagtgaaaataatatgatgat |
3080419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University