View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2848_high_68 (Length: 242)

Name: NF2848_high_68
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2848_high_68
NF2848_high_68
[»] chr6 (9 HSPs)
chr6 (1-236)||(34786264-34786499)
chr6 (5-81)||(13227127-13227199)
chr6 (1-50)||(6776603-6776652)
chr6 (1-50)||(12234503-12234552)
chr6 (1-50)||(33549135-33549184)
chr6 (1-50)||(12188299-12188348)
chr6 (4-85)||(6758387-6758464)
chr6 (1-49)||(12216775-12216823)
chr6 (1-49)||(32613137-32613185)
[»] chr1 (15 HSPs)
chr1 (1-48)||(12259291-12259338)
chr1 (1-50)||(12587301-12587350)
chr1 (1-49)||(15786317-15786365)
chr1 (1-48)||(17410262-17410309)
chr1 (4-50)||(17439951-17439997)
chr1 (1-51)||(50901613-50901663)
chr1 (5-50)||(2799897-2799942)
chr1 (12-49)||(7219915-7219952)
chr1 (1-50)||(8177178-8177227)
chr1 (1-50)||(8904445-8904494)
chr1 (1-50)||(9165191-9165240)
chr1 (1-50)||(12370194-12370243)
chr1 (9-50)||(18037609-18037650)
chr1 (1-50)||(33700769-33700818)
chr1 (1-50)||(51703810-51703859)
[»] scaffold1367 (1 HSPs)
scaffold1367 (1-50)||(836-885)
[»] scaffold0299 (1 HSPs)
scaffold0299 (1-50)||(11559-11608)
[»] chr7 (13 HSPs)
chr7 (1-50)||(3174958-3175007)
chr7 (1-50)||(9871282-9871331)
chr7 (1-50)||(23552149-23552198)
chr7 (10-50)||(7309396-7309436)
chr7 (1-41)||(26703156-26703196)
chr7 (1-51)||(17041007-17041057)
chr7 (3-45)||(21410711-21410753)
chr7 (9-50)||(2446347-2446388)
chr7 (1-50)||(26459406-26459455)
chr7 (9-50)||(37162346-37162387)
chr7 (1-50)||(45709704-45709753)
chr7 (6-50)||(9183187-9183231)
chr7 (1-45)||(48771969-48772013)
[»] chr4 (19 HSPs)
chr4 (9-58)||(13015466-13015515)
chr4 (2-50)||(40813314-40813362)
chr4 (1-48)||(39509101-39509148)
chr4 (8-50)||(2185028-2185070)
chr4 (8-50)||(8306523-8306565)
chr4 (1-48)||(30938217-30938264)
chr4 (8-50)||(7292794-7292836)
chr4 (4-50)||(7539624-7539670)
chr4 (5-47)||(41346962-41347004)
chr4 (1-50)||(2622391-2622440)
chr4 (5-50)||(21660140-21660185)
chr4 (5-50)||(21668904-21668949)
chr4 (1-50)||(23377987-23378036)
chr4 (1-50)||(28635727-28635776)
chr4 (1-50)||(37109347-37109396)
chr4 (1-46)||(38869799-38869844)
chr4 (12-48)||(15729524-15729560)
chr4 (9-45)||(43479626-43479662)
chr4 (5-49)||(43623441-43623485)
[»] chr2 (7 HSPs)
chr2 (1-50)||(25637182-25637231)
chr2 (1-49)||(26545871-26545919)
chr2 (1-48)||(39715023-39715070)
chr2 (8-46)||(42860386-42860424)
chr2 (1-45)||(28846722-28846766)
chr2 (12-48)||(40791488-40791524)
chr2 (1-49)||(42327392-42327440)
[»] chr5 (11 HSPs)
chr5 (1-48)||(84855-84902)
chr5 (1-48)||(41165627-41165674)
chr5 (1-50)||(16773838-16773887)
chr5 (1-50)||(22020858-22020907)
chr5 (1-50)||(29075812-29075861)
chr5 (1-50)||(12883871-12883920)
chr5 (1-50)||(14495801-14495850)
chr5 (1-50)||(21549133-21549182)
chr5 (1-50)||(29692382-29692431)
chr5 (5-50)||(43442231-43442276)
chr5 (1-49)||(1410657-1410704)
[»] scaffold0258 (1 HSPs)
scaffold0258 (1-50)||(15319-15368)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-50)||(106079-106128)
[»] chr8 (8 HSPs)
chr8 (1-50)||(968393-968442)
chr8 (5-49)||(11492070-11492114)
chr8 (1-44)||(5801078-5801121)
chr8 (23-58)||(9271557-9271592)
chr8 (1-48)||(16852371-16852418)
chr8 (1-50)||(27871699-27871748)
chr8 (1-50)||(34628673-34628722)
chr8 (9-50)||(35641897-35641938)
[»] chr3 (18 HSPs)
chr3 (1-50)||(4222172-4222221)
chr3 (1-50)||(4844507-4844556)
chr3 (1-50)||(4870203-4870252)
chr3 (1-50)||(10445135-10445184)
chr3 (9-50)||(36010781-36010822)
chr3 (1-50)||(44743851-44743900)
chr3 (1-50)||(51903874-51903923)
chr3 (1-49)||(30311337-30311385)
chr3 (3-49)||(52769980-52770026)
chr3 (1-50)||(2667893-2667942)
chr3 (1-50)||(28703400-28703449)
chr3 (5-50)||(29563935-29563980)
chr3 (1-50)||(30510195-30510244)
chr3 (1-50)||(31520601-31520650)
chr3 (1-50)||(36720412-36720461)
chr3 (1-50)||(37051290-37051339)
chr3 (1-50)||(39253728-39253777)
chr3 (1-50)||(47824146-47824195)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-47)||(19846-19892)
[»] scaffold0194 (1 HSPs)
scaffold0194 (5-50)||(13042-13087)
[»] scaffold0291 (1 HSPs)
scaffold0291 (4-48)||(2468-2512)


Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34786499 - 34786264
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctcatgtgtcagtcagtttaggtgggccaatttagctttggtggctccgctgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34786499 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctcatgtgtcagtcagtttaggtgggccaatttagctttggtggctccgctgg 34786400  T
Q  101 tattggtttgtagtgtcctgcannnnnnnnnacttcagttacttttttggtgtgtggttggagctgtcgtgttggttcaacctgtggtttgattccagtc 200  Q
    ||||||||||||||||||||||         |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34786399 tattggtttgtagtgtcctgcattttttcttacttcagttactttttaggtgtgtggttggagctgtcgtgttggttcaacctgtggtttgattccagtc 34786300  T
Q  201 ggcagtggtggttttgtgtgtccggttctgtgctgc 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  34786299 ggcagtggtggttttgtgtgtccggttctgtgctgc 34786264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 13227199 - 13227127
Alignment:
Q  5 gatctgggagtgtgctccttctcgaagtctcaagttcgattctctcatgtgtcagtcagtttaggtgggccaattta 81  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |    |||||||||||||||||||||||    
T  13227199 gatctgggagtgtgctcctcctcgaagtctcaagttcgattctctcatat----gtcagtttaggtgggccaattta 13227127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6776652 - 6776603
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||||| |||||||||| ||||| |||||||||| |||||||||    
T  6776652 ttgggatctgggggtgtgctcctcctcgatgtctcaagtttgattctctc 6776603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 12234552 - 12234503
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| ||||||||||||||| |||||| |||||| |||||||||||||    
T  12234552 ttgggacctgggagtgtgctccctctcgaggtctcaggttcgattctctc 12234503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 33549135 - 33549184
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| |||||||||||||||| ||||| |||||| |||||||||||||    
T  33549135 ttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 33549184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 12188348 - 12188299
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| |||||||||||||||| ||| | || |||||||||||||||||    
T  12188348 ttgggacctgggagtgtgctcctcctcaaggtttcaagttcgattctctc 12188299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 6758464 - 6758387
Alignment:
Q  4 ggatctgggagtgtgctccttctcgaagtctcaagttcgattctctcatgtgtcagtcagtttaggtgggccaatttagctt 85  Q
    |||| ||||||||||||||  ||||| |||||||| |||||||||||  ||    |||| ||||||||||| ||||||||||    
T  6758464 ggatttgggagtgtgctccacctcgaggtctcaagatcgattctctctggt----gtcaatttaggtgggcaaatttagctt 6758387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12216775 - 12216823
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctct 49  Q
    |||||| ||| || ||||||||||||||| |||||| ||||||||||||    
T  12216775 ttgggacctgcgaatgtgctccttctcgaggtctcaggttcgattctct 12216823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32613185 - 32613137
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctct 49  Q
    ||||| ||||||||||||||||||||| |  ||||| ||||||||||||    
T  32613185 ttggggtctgggagtgtgctccttctcaagatctcatgttcgattctct 32613137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12259291 - 12259338
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctc 48  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  12259291 ttgggatttgggagtgtgctcctcctcgaagtctcaagttcgattctc 12259338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 12587301 - 12587350
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||| |||||||||||| ||||| |||||| |||||||||||||    
T  12587301 ttgggatctgtgagtgtgctcctcctcgaggtctcaggttcgattctctc 12587350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15786365 - 15786317
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctct 49  Q
    ||||||||||||||||||||||| ||| | |||||| ||||||||||||    
T  15786365 ttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattctct 15786317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17410262 - 17410309
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctc 48  Q
    |||||||||||||||||| |||| |||||  |||||||||||||||||    
T  17410262 ttgggatctgggagtgtggtcctcctcgagatctcaagttcgattctc 17410309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 17439951 - 17439997
Alignment:
Q  4 ggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||||||||||||| ||||| |||||| ||| |||||||||    
T  17439951 ggatctgggagtgtgctcctcctcgaggtctcatgtttgattctctc 17439997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 50901613 - 50901663
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctca 51  Q
    |||||| |||| ||||||||||| ||||| ||||||| |||||||||||||    
T  50901613 ttgggacctggtagtgtgctcctcctcgaggtctcaaattcgattctctca 50901663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 2799897 - 2799942
Alignment:
Q  5 gatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||| ||| | |||||| |||||||||||||    
T  2799897 gatctgggagtgtgctcctcctcaaggtctcaggttcgattctctc 2799942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 7219952 - 7219915
Alignment:
Q  12 gagtgtgctccttctcgaagtctcaagttcgattctct 49  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  7219952 gagtgtgctcctcctcgaagtctcaggttcgattctct 7219915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 8177227 - 8177178
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||||| ||| | || ||| |||||||||||||    
T  8177227 ttgggatctgggagtgtgctcctcctcaaggtttcaggttcgattctctc 8177178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8904445 - 8904494
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||| || |||||||||||| ||| | ||||||||||||||||||||    
T  8904445 ttgggatatgtgagtgtgctcctcctcaaggtctcaagttcgattctctc 8904494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9165240 - 9165191
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| |||||||||||||||| ||| |||||||| |||| ||||||||    
T  9165240 ttgggacctgggagtgtgctcctcctcaaagtctcaggttcaattctctc 9165191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 12370194 - 12370243
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| |||||||||||||||| ||||| |||||| ||| |||||||||    
T  12370194 ttgggacctgggagtgtgctcctcctcgaggtctcatgtttgattctctc 12370243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 18037650 - 18037609
Alignment:
Q  9 tgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||||||||| ||||  |||||||||||||||||||    
T  18037650 tgggagtgtgctccttttcgagatctcaagttcgattctctc 18037609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33700818 - 33700769
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||| |||||||||||||||||| ||| | |||||| |||||||||||||    
T  33700818 ttggaatctgggagtgtgctcctcctcaaggtctcaggttcgattctctc 33700769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 51703810 - 51703859
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||| |||||||||||||||||| ||| |||| ||| |||||||||||||    
T  51703810 ttggaatctgggagtgtgctcctcctcaaagtttcaggttcgattctctc 51703859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 885 - 836
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||| ||||||||| |||||||||||| |||||||||||||    
T  885 ttgggatctgggaatgtgctcctcctcgaagtctcaggttcgattctctc 836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 11559 - 11608
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||||| ||||| |||||| |||||||||||||    
T  11559 ttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 11608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3174958 - 3175007
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||||||||||||||| |||||| |||||| |||||||||||||    
T  3174958 ttgggatctgggagtgtgctccatctcgaggtctcaggttcgattctctc 3175007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9871331 - 9871282
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||| ||||||||||||||| ||||||||||||  ||||||||||||    
T  9871331 ttgggatttgggagtgtgctcctcctcgaagtctcagattcgattctctc 9871282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 23552149 - 23552198
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| |||||||||||||||| ||| | ||||||||||||||||||||    
T  23552149 ttgggacctgggagtgtgctcctcctcaaggtctcaagttcgattctctc 23552198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 7309396 - 7309436
Alignment:
Q  10 gggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  7309396 gggagtgtgctcctcctcgaggtctcaagttcgattctctc 7309436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26703156 - 26703196
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttc 41  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  26703156 ttgggatctgggagtgtgctccttctcgaggtctcaggttc 26703196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17041057 - 17041007
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctca 51  Q
    ||||||||||| ||||||||||| ||| | |||||| ||||||||||||||    
T  17041057 ttgggatctggaagtgtgctcctcctcaaggtctcaggttcgattctctca 17041007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 21410753 - 21410711
Alignment:
Q  3 gggatctgggagtgtgctccttctcgaagtctcaagttcgatt 45  Q
    |||||||| |||||||||||| ||||||||||||| |||||||    
T  21410753 gggatctgagagtgtgctcctcctcgaagtctcaaattcgatt 21410711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 2446347 - 2446388
Alignment:
Q  9 tgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||| |||||  |||||||||||||||||||    
T  2446347 tgggagtgtgctcctcctcgagatctcaagttcgattctctc 2446388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 26459455 - 26459406
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| |||||||||||||||| ||| | |||||| |||||||||||||    
T  26459455 ttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctc 26459406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 37162387 - 37162346
Alignment:
Q  9 tgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||||| |||||| | ||||||||||||||||||||    
T  37162387 tgggagtgtgcttcttctcaaggtctcaagttcgattctctc 37162346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 45709753 - 45709704
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||| |||||||||||| ||||| |||||| |||||||| ||||    
T  45709753 ttgggatctgagagtgtgctcctcctcgaggtctcaggttcgattatctc 45709704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 9183231 - 9183187
Alignment:
Q  6 atctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||    
T  9183231 atctgggagtgtgctcctcctcaaagtctcaggttcgattatctc 9183187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48771969 - 48772013
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgatt 45  Q
    ||||||||||||||||||||||| || || |||||| ||||||||    
T  48771969 ttgggatctgggagtgtgctcctccttgaggtctcaggttcgatt 48772013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 13015466 - 13015515
Alignment:
Q  9 tgggagtgtgctccttctcgaagtctcaagttcgattctctcatgtgtca 58  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||||||    
T  13015466 tgggagtgtgctcctcctcgaagtctcatgttcgattctctcaggtgtca 13015515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 40813362 - 40813314
Alignment:
Q  2 tgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  40813362 tgggatctgggagtgtgctccttttcgaagtctcaggttcgatactctc 40813314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39509101 - 39509148
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctc 48  Q
    ||||||||||||||||||||||| ||||| |||||| |||||||||||    
T  39509101 ttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattctc 39509148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 2185070 - 2185028
Alignment:
Q  8 ctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  2185070 ctgggagtgtgctccttctcaaagtctcaggttcgattctctc 2185028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 8306523 - 8306565
Alignment:
Q  8 ctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||||||||| |||||||||| |||||||||||||||    
T  8306523 ctgggagtgtgctcctcctcgaagtcttaagttcgattctctc 8306565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30938264 - 30938217
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctc 48  Q
    ||||||||| ||||||||||||| ||||| |||||| |||||||||||    
T  30938264 ttgggatcttggagtgtgctcctcctcgaggtctcaggttcgattctc 30938217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 7292836 - 7292794
Alignment:
Q  8 ctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||||||||| ||| |||||||| |||||||||||||    
T  7292836 ctgggagtgtgctcctcctcaaagtctcaggttcgattctctc 7292794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 7539624 - 7539670
Alignment:
Q  4 ggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||||| ||||||||||| | |||||| |||||||||||||    
T  7539624 ggatctgggagtatgctccttctcaaggtctcaggttcgattctctc 7539670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 41347004 - 41346962
Alignment:
Q  5 gatctgggagtgtgctccttctcgaagtctcaagttcgattct 47  Q
    ||||||||||| ||||||| |||||||||||| ||||||||||    
T  41347004 gatctgggagtatgctcctcctcgaagtctcaggttcgattct 41346962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2622440 - 2622391
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| |||||||||||||||| ||| | |||||| |||||||||||||    
T  2622440 ttgggacctgggagtgtgctcctcctccatgtctcaggttcgattctctc 2622391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 21660185 - 21660140
Alignment:
Q  5 gatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||| | ||||| ||||||||||||||| ||||    
T  21660185 gatctgggagtgtgctcttcctcgaggtctcaagttcgattatctc 21660140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 21668949 - 21668904
Alignment:
Q  5 gatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||| | ||||| ||||||||||||||| ||||    
T  21668949 gatctgggagtgtgctcttcctcgaggtctcaagttcgattatctc 21668904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 23377987 - 23378036
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| |||||||||||||||| ||| | |||||| |||||||||||||    
T  23377987 ttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctc 23378036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28635727 - 28635776
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||||| || || |||| | |||||||||||||    
T  28635727 ttgggatctgggagtgtgctcctcctggaggtcttaggttcgattctctc 28635776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37109396 - 37109347
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| |||||||||||||||| ||| | |||||| |||||||||||||    
T  37109396 ttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctc 37109347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38869799 - 38869844
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattc 46  Q
    ||||||||||||||||||||||| ||| | |||||| |||||||||    
T  38869799 ttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattc 38869844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 15729524 - 15729560
Alignment:
Q  12 gagtgtgctccttctcgaagtctcaagttcgattctc 48  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  15729524 gagtgtgctcctcctcgatgtctcaagttcgattctc 15729560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 43479662 - 43479626
Alignment:
Q  9 tgggagtgtgctccttctcgaagtctcaagttcgatt 45  Q
    |||||||||||||||||||||||| | ||||||||||    
T  43479662 tgggagtgtgctccttctcgaagtattaagttcgatt 43479626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 43623485 - 43623441
Alignment:
Q  5 gatctgggagtgtgctccttctcgaagtctcaagttcgattctct 49  Q
    |||| |||||||||||||| || ||||||||| ||||||||||||    
T  43623485 gatcagggagtgtgctcctccttgaagtctcaggttcgattctct 43623441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25637182 - 25637231
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||||||||||| |||||| ||||| |||||||    
T  25637182 ttgggatctgggagtgtgctccttctcgaggtctcaggttcggttctctc 25637231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26545871 - 26545919
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctct 49  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||||    
T  26545871 ttgggatctggaagtgtgctccttctcgaggtctcaagtttgattctct 26545919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39715023 - 39715070
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctc 48  Q
    |||||| |||||||||||||||| ||||| |||||| |||||||||||    
T  39715023 ttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctc 39715070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 42860386 - 42860424
Alignment:
Q  8 ctgggagtgtgctccttctcgaagtctcaagttcgattc 46  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  42860386 ctgggagtgtgctcctcctcgaggtctcaagttcgattc 42860424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28846722 - 28846766
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgatt 45  Q
    |||||| |||||||||||||||| ||||| |||||| ||||||||    
T  28846722 ttgggacctgggagtgtgctcctcctcgatgtctcaggttcgatt 28846766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 40791524 - 40791488
Alignment:
Q  12 gagtgtgctccttctcgaagtctcaagttcgattctc 48  Q
    |||||||||||||||| | ||||||||||||||||||    
T  40791524 gagtgtgctccttctcaaggtctcaagttcgattctc 40791488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42327440 - 42327392
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctct 49  Q
    |||||| |||||||||||||||| ||| | |||||| ||||||||||||    
T  42327440 ttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctct 42327392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 84855 - 84902
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctc 48  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  84855 ttgggatctgggagtgtgctcctcctcaaggtctcaagttcgattctc 84902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 41165674 - 41165627
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctc 48  Q
    |||||||||||||||||||||||||||||||||| |  ||||||||||    
T  41165674 ttgggatctgggagtgtgctccttctcgaagtcttagattcgattctc 41165627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16773838 - 16773887
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| |||||||||||||||| ||||| |||||| |||||||||||||    
T  16773838 ttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 16773887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 22020907 - 22020858
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||||| || |||||||||  ||||||||||||    
T  22020907 ttgggatctgggagtgtgctcctccttgaagtctcagattcgattctctc 22020858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 29075812 - 29075861
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||||| |||||  ||||| |||||||||||||    
T  29075812 ttgggatctgggagtgtgctcctcctcgagatctcatgttcgattctctc 29075861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 12883871 - 12883920
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||||| || || |||||| |||| ||||||||    
T  12883871 ttgggatctgggagtgtgctcctccttgaggtctcatgttcaattctctc 12883920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 14495850 - 14495801
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||||| ||||| ||||||  || |||||||||    
T  14495850 ttgggatctgggagtgtgctcctcctcgaggtctcagatttgattctctc 14495801  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 21549182 - 21549133
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| |||||||||||||||| ||  ||||||||||||||||| ||||    
T  21549182 ttgggacctgggagtgtgctcctccttaaagtctcaagttcgattttctc 21549133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29692431 - 29692382
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||||| ||| |||||||| |||  ||||||||    
T  29692431 ttgggatctgggagtgtgctcctcctcaaagtctcaggtttaattctctc 29692382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 43442231 - 43442276
Alignment:
Q  5 gatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||| ||| | |||||| |||||||||||||    
T  43442231 gatctgggagtgtgctcctcctcaaggtctcaggttcgattctctc 43442276  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1410704 - 1410657
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctct 49  Q
    ||||||| ||||||||||||||| ||||| ||||| |||||||||||||    
T  1410704 ttgggatatgggagtgtgctcctcctcgaggtctc-agttcgattctct 1410657  T

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Target: scaffold0258 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 15368 - 15319
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| |||||||||||||||| ||||| |||||| |||||||||||||    
T  15368 ttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 15319  T

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Target: scaffold0021 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 106079 - 106128
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| | ||||||||||| ||||||||||||| |||||||||||||||    
T  106079 ttgggaccagggagtgtgctgcttctcgaagtctaaagttcgattctctc 106128  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 968393 - 968442
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| |||||||||||||||| ||||| |||||| |||||||||||||    
T  968393 ttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 968442  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 11492114 - 11492070
Alignment:
Q  5 gatctgggagtgtgctccttctcgaagtctcaagttcgattctct 49  Q
    ||||||||||||||||||||||||| |||| | ||||||||||||    
T  11492114 gatctgggagtgtgctccttctcgaggtcttaggttcgattctct 11492070  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5801078 - 5801121
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgat 44  Q
    ||||||||| |||||||||||| |||||| ||||||||||||||    
T  5801078 ttgggatctaggagtgtgctccgtctcgacgtctcaagttcgat 5801121  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 9271592 - 9271557
Alignment:
Q  23 ttctcgaagtctcaagttcgattctctcatgtgtca 58  Q
    ||||| ||||||||||||||||||||||||||||||    
T  9271592 ttctcaaagtctcaagttcgattctctcatgtgtca 9271557  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16852371 - 16852418
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctc 48  Q
    |||||| |||||||||||||||| ||||| |||||| |||||||||||    
T  16852371 ttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctc 16852418  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27871699 - 27871748
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||| ||||| || |||| ||| ||||||||||||||||||||||    
T  27871699 ttgggatcttggagtttgttcctcctcaaagtctcaagttcgattctctc 27871748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34628673 - 34628722
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||||||||||| | || ||| |||||||| |||||||||||||    
T  34628673 ttgggatctgggagtgtgtttctcctcaaagtctcaggttcgattctctc 34628722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 35641938 - 35641897
Alignment:
Q  9 tgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||| ||||| |||||| |||||||||||||    
T  35641938 tgggagtgtgctcctcctcgatgtctcaggttcgattctctc 35641897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4222172 - 4222221
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||||| ||| |||||| | |||||||||||||    
T  4222172 ttgggatctgggagtgtgctcctcctcaaagtcttaggttcgattctctc 4222221  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4844556 - 4844507
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||||| ||||| |||||| | |||||||||||    
T  4844556 ttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctc 4844507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4870252 - 4870203
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||||| ||||| |||||| | |||||||||||    
T  4870252 ttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctc 4870203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10445184 - 10445135
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| |||||||||||||||| ||||| |||||| |||||||||||||    
T  10445184 ttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 10445135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 36010781 - 36010822
Alignment:
Q  9 tgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  36010781 tgggagtgtgctcctcctcaaagtctcaagttcgattctctc 36010822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 44743900 - 44743851
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||||| ||||| |||||| |||||||| ||||    
T  44743900 ttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattatctc 44743851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 51903923 - 51903874
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||||| ||||  |||||| |||||||||||||    
T  51903923 ttgggatctgggagtgtgctcctcctcgtggtctcaggttcgattctctc 51903874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30311337 - 30311385
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctct 49  Q
    ||||||||||||||||||||||| ||| | |||||| ||||||||||||    
T  30311337 ttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattctct 30311385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 52770026 - 52769980
Alignment:
Q  3 gggatctgggagtgtgctccttctcgaagtctcaagttcgattctct 49  Q
    ||||||||||||||||||||| || || |||||| ||||||||||||    
T  52770026 gggatctgggagtgtgctcctccttgaggtctcaggttcgattctct 52769980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 2667893 - 2667942
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||| | ||||| |||||| |||||||| ||||    
T  2667893 ttgggatctgggagtgtgctcttcctcgaggtctcaggttcgattatctc 2667942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28703449 - 28703400
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||||||||||||||||  || | |||||| |||||||||||||    
T  28703449 ttgggatctgggagtgtgctcctcttcaaggtctcaggttcgattctctc 28703400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 29563935 - 29563980
Alignment:
Q  5 gatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||| |||||||| || |||||||||||| |||||||||||||    
T  29563935 gatctggaagtgtgcttctcctcgaagtctcaggttcgattctctc 29563980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30510244 - 30510195
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||| || ||||| ||||||||||||| |||||| |||||||||||||    
T  30510244 ttgggacctaggagtatgctccttctcgaggtctcaggttcgattctctc 30510195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31520650 - 31520601
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||||||| ||||| |||| | ||| |||||||||    
T  31520650 ttgggatctgggagtgtgctcctcctcgaggtcttaggtttgattctctc 31520601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 36720412 - 36720461
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||| ||||||||||||||| ||||| || ||| |||||||||||||    
T  36720412 ttgggatatgggagtgtgctcctcctcgaggtttcaggttcgattctctc 36720461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37051339 - 37051290
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||||||||||| |||| ||  |||||||| |||||||||||||    
T  37051339 ttgggatctgggagtgtgttcctccttaaagtctcaggttcgattctctc 37051290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39253728 - 39253777
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||||||||||||||||  || | |||||| |||||||||||||    
T  39253728 ttgggatctgggagtgtgctcctcttcaaggtctcaggttcgattctctc 39253777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 47824146 - 47824195
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    |||||||||| |||||| ||||| ||| ||||||| ||||||||||||||    
T  47824146 ttgggatctgagagtgtactcctcctcaaagtctctagttcgattctctc 47824195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19892 - 19846
Alignment:
Q  1 ttgggatctgggagtgtgctccttctcgaagtctcaagttcgattct 47  Q
    ||||||||||||||| ||||||| || || |||||||||||||||||    
T  19892 ttgggatctgggagtctgctcctccttgaggtctcaagttcgattct 19846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 13087 - 13042
Alignment:
Q  5 gatctgggagtgtgctccttctcgaagtctcaagttcgattctctc 50  Q
    ||||||||||||||||||| ||| | |||||| |||||||||||||    
T  13087 gatctgggagtgtgctcctcctcaaggtctcaggttcgattctctc 13042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 2512 - 2468
Alignment:
Q  4 ggatctgggagtgtgctccttctcgaagtctcaagttcgattctc 48  Q
    |||||||||||||||||||| ||| | |||||| |||||||||||    
T  2512 ggatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 2468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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