View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_high_7 (Length: 570)
Name: NF2848_high_7
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 523; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Complemental strand, 3945989 - 3945448
Alignment:
| Q |
18 |
tcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtactc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3945989 |
tcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtactc |
3945890 |
T |
|
| Q |
118 |
ttagaaatgttcctgttggtggtggttacagaagaaacaactcaaacaaacgtagtaacaatactactctcatcaaaataccctccaccattgatacttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3945889 |
ttagaaatgttcctgttggtggtggttacagaagaaacaactcaaacaaacgtagtaacaatactactctcatcaaaataccctccaccattgatacttc |
3945790 |
T |
|
| Q |
218 |
tatttcttcttctccttcttcaactcctagttccacaccaaacaccacttcttcaaattcaaccttaaatcataatattagtcctatgttttatggttta |
317 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3945789 |
tatttcttcttctccttc---aactcctagttccacaccaaacaccacttcttcaaattcaaccttaaatcataatattagtcctatgttttatggttta |
3945693 |
T |
|
| Q |
318 |
tcaagtagtaactcttgtgatgtgaatcttccattctcaaggttcaatatctctagactctcaacaagttcaggttatgattttcagcctcagatgaata |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3945692 |
tcaagtagtaactcttgtgatgtgaatcttccattctcaaggttcaatatctctagactctcaacaagttcaggttatgattttcagcctcagatgaata |
3945593 |
T |
|
| Q |
418 |
ctattggattaggcttttcatccgggtttacgtccagtgaagccaatgatcataatggttatacaaatggatttacttcaagatatggttcaatctttag |
517 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3945592 |
ctattggattaggcttttcatctgggtttacgtccagtgaagccaatgatcataatggttatacaaatggatttacttcaagatatggttcaatctttag |
3945493 |
T |
|
| Q |
518 |
ttcttcttctgtaccaagtaatgcatcagttatgccctctctgct |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
3945492 |
ttcttcttctgtaccaagtaatgcatcagttatgccttctctgct |
3945448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 157
Target Start/End: Original strand, 39741077 - 39741198
Alignment:
| Q |
36 |
tgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtactcttagaaatgttcctgttg |
135 |
Q |
| |
|
||||| ||||||||||||||| | | || |||||| ||||||| ||| |||||| | | |||||||| | |||||| || | || ||||||||||||| |
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|
| T |
39741077 |
tgttattacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggtattggaccaaaggtggaacattaaggaatgttcctgttg |
39741176 |
T |
|
| Q |
136 |
gtggtggttacagaagaaacaa |
157 |
Q |
| |
|
| ||||| | ||||| |||||| |
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|
| T |
39741177 |
gaggtggatgcagaaaaaacaa |
39741198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 3591934 - 3591978
Alignment:
| Q |
97 |
attggacaagaggtggtactcttagaaatgttcctgttggtggtg |
141 |
Q |
| |
|
||||||| | |||||||||||| || ||||||||||||||||||| |
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|
| T |
3591934 |
attggactaaaggtggtactctaaggaatgttcctgttggtggtg |
3591978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 35202333 - 35202472
Alignment:
| Q |
18 |
tcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtactc |
117 |
Q |
| |
|
||||||||||| || || |||||||| || ||||| ||||| |||||||||||||| ||||| ||||| || ||| | ||||||||||||||||| || | |
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|
| T |
35202333 |
tcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacac |
35202432 |
T |
|
| Q |
118 |
ttagaaatgttcctgttggtggtggttacagaagaaacaa |
157 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||||| |
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|
| T |
35202433 |
ttagaaacgttcctgttggtggtggttgcagaaaaaacaa |
35202472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 22483518 - 22483403
Alignment:
| Q |
24 |
aacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtactcttagaa |
123 |
Q |
| |
|
||||| || ||||||||||||||||| |||||| | |||||||||||| ||||||| || |||| | | |||||||| | ||||||||| || || | |
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|
| T |
22483518 |
aacaccaaattttgttactacaacaattacagtctttcacaaccaagatatttctgcaagtcttgtaggagatattggactaaaggtggtacactaagga |
22483419 |
T |
|
| Q |
124 |
atgttcctgttggtgg |
139 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
22483418 |
atgttcctgttggtgg |
22483403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 35721724 - 35721844
Alignment:
| Q |
22 |
caaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtactcttag |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| ||||| | || ||||||| |||||| ||| | | ||||| | |||||| ||||| | |
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|
| T |
35721724 |
caaacacaaagttttgttactacaacaattacaacaagtctcaacctcgtcacttctgtagagcttgtaaaagacactggactaaaggtggaactctacg |
35721823 |
T |
|
| Q |
122 |
aaatgttcctgttggtggtgg |
142 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
35721824 |
caatgttcctgttggtggtgg |
35721844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 23663651 - 23663697
Alignment:
| Q |
93 |
cgttattggacaagaggtggtactcttagaaatgttcctgttggtgg |
139 |
Q |
| |
|
||||||||||||||||| ||| | |||||||||||||| |||||||| |
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|
| T |
23663651 |
cgttattggacaagagggggtgcacttagaaatgttccagttggtgg |
23663697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 34645998 - 34646132
Alignment:
| Q |
24 |
aacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtactcttagaa |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||| ||| | || | | | |||||||| |||||| | |||||| |
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|
| T |
34645998 |
aacacaaaattttgttactacaacaactatagtttgacacaaccaagatatttctgcaaaacatgtagaaggtattggactcaaggtggatccattagaa |
34646097 |
T |
|
| Q |
124 |
atgttcctgttggtggtggttacagaagaaacaac |
158 |
Q |
| |
|
| |||||||||||||||||| |||| ||||||| |
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|
| T |
34646098 |
acattcctgttggtggtggttcaagaaaaaacaac |
34646132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 24878860 - 24878995
Alignment:
| Q |
21 |
tcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtactctta |
120 |
Q |
| |
|
||||||||||| || || |||||||| |||||||| || | ||||||||| |||| || |||| |||| | | |||||||||| |||||| | || | |
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|
| T |
24878860 |
tcaaacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattggacaaaaggtggatccctca |
24878959 |
T |
|
| Q |
121 |
gaaatgttcctgttggtggtggttacagaagaaaca |
156 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
24878960 |
gaaatgttcctgttggtggtggctgcagaaaaaaca |
24878995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 8132155 - 8132015
Alignment:
| Q |
17 |
atcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtact |
116 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||||||| | | ||||||||| | ||||| || ||| |||| ||||||||||| | ||||||| | |
|
|
| T |
8132155 |
atcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattggactaaaggtggtgca |
8132056 |
T |
|
| Q |
117 |
cttagaaatgttcctgttggtggtggttacagaagaaacaa |
157 |
Q |
| |
|
||| |||| ||||||||||| ||||||| ||||| ||||| |
|
|
| T |
8132055 |
cttcgaaacgttcctgttggaggtggttgtagaaggaacaa |
8132015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 41086280 - 41086156
Alignment:
| Q |
18 |
tcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtactc |
117 |
Q |
| |
|
||||||||||| || || |||||||||||||| ||||| ||||| || ||| | |||| || |||| ||| | |||||||||||| | |||||| ||| |
|
|
| T |
41086280 |
tcatcaaacaccaaattctgttactacaacaattacagcttgtcccagccacggtatttttgcaaaggttgtagacgttattggaccaaaggtggctctc |
41086181 |
T |
|
| Q |
118 |
ttagaaatgttcctgttggtggtgg |
142 |
Q |
| |
|
|| | |||||||||||||||||||| |
|
|
| T |
41086180 |
ttcggaatgttcctgttggtggtgg |
41086156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 28437329 - 28437412
Alignment:
| Q |
22 |
caaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaa |
105 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| | | ||||||||||||||||| ||| | |||| | | |||||||||| |
|
|
| T |
28437329 |
caaacacaaaattctgttactacaacaactacagtctcactcaaccaagacatttctgcaaaacatgcagaagatattggacaa |
28437412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 33823827 - 33823861
Alignment:
| Q |
18 |
tcatcaaacacaaagttttgttactacaacaacta |
52 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
33823827 |
tcatcaaacacaaaattttgttactacaacaacta |
33823861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 13481037 - 13481125
Alignment:
| Q |
24 |
aacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtgg |
112 |
Q |
| |
|
|||||||| || || |||||||||||||| || || ||||||||||||||||||| ||| | || | | | |||||||||| |||||| |
|
|
| T |
13481037 |
aacacaaaattctgctactacaacaactatagcttaacacaaccaagacatttctgcaaaacatgtagaagatattggacaaaaggtgg |
13481125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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