View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2848_high_72 (Length: 238)

Name: NF2848_high_72
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2848_high_72
NF2848_high_72
[»] chr8 (6 HSPs)
chr8 (2-222)||(16528718-16528938)
chr8 (90-222)||(16570228-16570360)
chr8 (58-222)||(16588912-16589083)
chr8 (147-222)||(26370204-26370279)
chr8 (137-216)||(16520235-16520314)
chr8 (11-45)||(16570147-16570181)
[»] chr3 (2 HSPs)
chr3 (147-222)||(2606939-2607014)
chr3 (150-208)||(39161274-39161332)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 16528718 - 16528938
Alignment:
Q  2 tcaaattgtaaaatattcaaaacatgcacaagaccatttatttggataccagaagtatttcaaataaggtaaccataatgtgcatgtgaaattcaaggct 101  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16528718 tcaaattgcaaaatattcaaaacatgcacaagaccatttatttggataccagaagtatttcaaataaggtaaccataatgtgcatgtgaaattcaaggct 16528817  T
Q  102 tttttcaagatgtattttatacttaataatgctaggaatcaaaatagtacctgagccaaatagcctcctattgccggcccaataattaaacctacgcccc 201  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16528818 tttttcaagatgtattttatacttgataatgctaggaatcaaaatagtacctgagccaaatagcctcctattgccgggccaataattaaacctacgcccc 16528917  T
Q  202 aagctgcactaacctgaaatc 222  Q
    |||||||||||||||||||||    
T  16528918 aagctgcactaacctgaaatc 16528938  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 16570228 - 16570360
Alignment:
Q  90 aaattcaaggcttttttcaagatgtattttatacttaataatgctaggaatcaaaatagtacctgagccaaatagcctcctattgccggcccaataatta 189  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||    
T  16570228 aaattcaaggcttttttcaagatgtattttatacttgataatgctaggaatcaaaatagtacctgagccaaatagcctcctattgctgggccaacaatta 16570327  T
Q  190 aacctacgccccaagctgcactaacctgaaatc 222  Q
    | ||||| |||||||||||||||||||||||||    
T  16570328 agcctacaccccaagctgcactaacctgaaatc 16570360  T

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Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 222
Target Start/End: Original strand, 16588912 - 16589083
Alignment:
Q  58 atttcaaataaggtaaccataatgtgcatgtgaaa-ttcaaggcttttttcaagatgtattttatacttaata-------atgctaggaatcaaaatagt 149  Q
    ||||||||||| |||| | || ||||||||| ||| ||||||| ||| ||||||||||||||||||||| |||       |||||| |||||||||||||    
T  16588912 atttcaaataatgtaatctta-tgtgcatgtaaaaattcaaggatttcttcaagatgtattttatactttatacttgataatgctaagaatcaaaatagt 16589010  T
Q  150 acctgagccaaatagcctcctattgccggcccaataattaaacctacgccccaagctgcactaacctgaaatc 222  Q
    |||||||||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||||||||    
T  16589011 acctgagccaaatagcctcctattgctgggccaacaattaaacctatgccccaagctgcactaacctgaaatc 16589083  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 26370204 - 26370279
Alignment:
Q  147 agtacctgagccaaatagcctcctattgccggcccaataattaaacctacgccccaagctgcactaacctgaaatc 222  Q
    ||||||||||||||||| ||||| |  || || ||||| |||||||||| ||||||||||||||| | ||||||||    
T  26370204 agtacctgagccaaataacctcccaaagctggtccaattattaaacctatgccccaagctgcactcaactgaaatc 26370279  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 16520235 - 16520314
Alignment:
Q  137 gaatcaaaatagtacctgagccaaatagcctcctattgccggcccaataattaaacctacgccccaagctgcactaacct 216  Q
    |||| ||||||| |||||||||||||||||||| | ||| || ||||| |||||||||   |||||||| ||||| ||||    
T  16520235 gaatgaaaatagcacctgagccaaatagcctcccaatgctggtccaatgattaaacctgttccccaagccgcacttacct 16520314  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 16570147 - 16570181
Alignment:
Q  11 aaaatattcaaaacatgcacaagaccatttatttg 45  Q
    ||||||| |||||||||||||||||||||||||||    
T  16570147 aaaatatccaaaacatgcacaagaccatttatttg 16570181  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 2607014 - 2606939
Alignment:
Q  147 agtacctgagccaaatagcctcctattgccggcccaataattaaacctacgccccaagctgcactaacctgaaatc 222  Q
    ||||||||||||||||| ||||| |  || || ||||| |||||||||| ||||||||||||||| | ||||||||    
T  2607014 agtacctgagccaaataacctcccaaagctggtccaattattaaacctatgccccaagctgcactgaactgaaatc 2606939  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 39161332 - 39161274
Alignment:
Q  150 acctgagccaaatagcctcctattgccggcccaataattaaacctacgccccaagctgc 208  Q
    |||||||||||||| ||||||| ||| || ||||| | ||||||||| |||||||||||    
T  39161332 acctgagccaaataacctcctaatgctggaccaatgactaaacctactccccaagctgc 39161274  T

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