View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2848_high_8 (Length: 547)

Name: NF2848_high_8
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2848_high_8
NF2848_high_8
[»] chr4 (2 HSPs)
chr4 (1-244)||(38028806-38029049)
chr4 (321-392)||(38029127-38029198)
[»] chr6 (3 HSPs)
chr6 (321-410)||(31574789-31574878)
chr6 (158-248)||(31574623-31574713)
chr6 (42-93)||(31574566-31574617)
[»] chr3 (2 HSPs)
chr3 (323-410)||(6509593-6509680)
chr3 (158-248)||(6509418-6509512)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 38028806 - 38029049
Alignment:
Q  1 cgcaagcagccaatcactaagattccaccgcataccaccactgtcttctgtttttctcatctttatctaaccatgttcaaaacaaggcatttgatcacaa 100  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38028806 cgcaagcagccaatcactaagattctaccgcataccaccaccgtcttctgtttttctcatctttatctaaccatgttcaaaacaaagcatttgatcacaa 38028905  T
Q  101 ttgattggcaaacacattgccctcaacgacactgtttcagcaatgaaatccaaatcaaacgaccacaatgcaaacaggcatgaactcaataatcgccgca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38028906 ttgattggcaaacacattgccctcaacgacactgtttcagcaatgaaatccaaatcaaacgaccacaatgcaaacaggcatgaactcaacaatcgccgca 38029005  T
Q  201 acattctcaccaataatcaaacacaaaacgcaaaaaactgcaca 244  Q
    ||| ||||||||||||||||||||||||||||||||||||||||    
T  38029006 acagtctcaccaataatcaaacacaaaacgcaaaaaactgcaca 38029049  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 321 - 392
Target Start/End: Original strand, 38029127 - 38029198
Alignment:
Q  321 ccagagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgatctaatagaattttac 392  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  38029127 ccagagttttcaagagccaagtgattatagtggttgattcgtttagacaaagttgatctaatagaaatttac 38029198  T

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Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 321 - 410
Target Start/End: Original strand, 31574789 - 31574878
Alignment:
Q  321 ccagagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgatctaatagaattttacgaagtgaaaagagaaaca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |||| ||||||||||||||||||    
T  31574789 ccagagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgttgttatagaaatttatgaagtgaaaagagaaaca 31574878  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 158 - 248
Target Start/End: Original strand, 31574623 - 31574713
Alignment:
Q  158 aacgaccacaatgcaaacaggcatgaactcaataatcgccgcaacattctcaccaataatcaaacacaaaacgcaaaaaactgcacagaac 248  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||| |||| ||||||||||||||| |||| ||||||||||||||||||    
T  31574623 aacgaccacaatgcaaacaggcatgaactcaacactcgccccaacaatctccccaataatcaaacactaaacacaaaaaactgcacagaac 31574713  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 31574566 - 31574617
Alignment:
Q  42 tgtcttctgtttttctcatctttatctaaccatgttcaaaacaaggcatttg 93  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31574566 tgtcttctgtttttctcatctttatctaaccatgttcaaaacaaagcatttg 31574617  T

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Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 323 - 410
Target Start/End: Original strand, 6509593 - 6509680
Alignment:
Q  323 agagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgatctaatagaattttacgaagtgaaaagagaaaca 410  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |||||| |||| ||||||||||||||||||    
T  6509593 agagttttcaagagccaagtgattatagtggttgattcgtttagacaaagttgttgttatagaaatttatgaagtgaaaagagaaaca 6509680  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 248
Target Start/End: Original strand, 6509418 - 6509512
Alignment:
Q  158 aacgaccacaatgcaaacaggcatgaactcaataatcgccgcaacattctcaccaataatcaaacac----aaaacgcaaaaaactgcacagaac 248  Q
    |||||||||||||||||||||||||||||||| | ||||  ||||| ||||||||||||||||||||     |||| ||||||||||||||||||    
T  6509418 aacgaccacaatgcaaacaggcatgaactcaacagtcgctccaacaatctcaccaataatcaaacactaaataaacacaaaaaactgcacagaac 6509512  T

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