View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_high_81 (Length: 227)
Name: NF2848_high_81
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_high_81 |
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Alignment Details
Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 50038945 - 50039112
Alignment:
| Q |
17 |
cacagagtttggtgtttgatatagacactccttttttccttttnnnnnnnnn-gatactccnnnnnnnnn-gcttttcattctaaataaaagtctccatt |
114 |
Q |
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| T |
50038945 |
cacagagtttggtgtttgatatagacactccttttttccttttaaaaaaaaaagatactccttttttttttgcttttcattctaaataaaagtctccatt |
50039044 |
T |
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| Q |
115 |
aattagaacaattccattaaagatgctgttagcaattgtttatataa-----tagtagtacttgttaaaaa |
180 |
Q |
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| T |
50039045 |
aatta---caattccattaaagatgctgttagcaattgtttatataatggagtagtagtacttgttaaaaa |
50039112 |
T |
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