View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_high_82 (Length: 224)
Name: NF2848_high_82
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_high_82 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 3874223 - 3874007
Alignment:
| Q |
1 |
tctcctctatacatagatcacagatcagagagtgaattggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgctttttgtattgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3874223 |
tctcctctatacatagatcacagatcagagagtgagttggaagatgatgaacaaccaattagtgttactttatggttaccaatgttactttttgtattgg |
3874124 |
T |
|
| Q |
101 |
ttttagtcatatctttatcagnnnnnnnggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgtttt |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3874123 |
ttttagtcatatctttatcagcttttttggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgtttt |
3874024 |
T |
|
| Q |
201 |
cattcttattcttctct |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
3874023 |
cattcttattcttctct |
3874007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 3884751 - 3884536
Alignment:
| Q |
1 |
tctcctctatacatagatcacagatcagagagtgaattggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgctttttgtattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3884751 |
tctcctctatacatagatcacagatcagagagtgaattggaagatgatgaacaacctattagtgttactttatggttaccaatgttgctttttgtattgg |
3884652 |
T |
|
| Q |
101 |
ttttagtcatatctttatcagnnnnnnnggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgtttt |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3884651 |
ttttagtcatatctttatcagcttttttagataagagcttcacaaggtttgatcgtaattggattcatagagttggt-gttcttctggtggtattgtttt |
3884553 |
T |
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| Q |
201 |
cattcttattcttctct |
217 |
Q |
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||||||||||||||||| |
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| T |
3884552 |
cattcttattcttctct |
3884536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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