View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_high_84 (Length: 222)
Name: NF2848_high_84
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_high_84 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 35081228 - 35081443
Alignment:
| Q |
1 |
gaataggaatgatagagaaaaataaaatatgtaaaccactttctcannnnnnn--aggaaatagcaagaattagtctttgtgatcatacctagtttgcat |
98 |
Q |
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| T |
35081228 |
gaataggaatgatagagaaaaataaaatatgtaaaccactttctcatttttttttaggaaatagcaagaattagtctttgtgatcatacctagtttgcat |
35081327 |
T |
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| Q |
99 |
ggacgttgttgcactacgatatttaataaccggaatttgaatttagaattttctacttattcatcttaagagtgaaactaagaacaataaatgtaaaata |
198 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |
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| T |
35081328 |
cgacgttgttgcactacgatatttaataaccgaaatttgaatttagaattttctacttattcatcttaagagtgaaactaaaaataataaatttaaaatt |
35081427 |
T |
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| Q |
199 |
ttacgcagcctatgct |
214 |
Q |
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|||||||||||||||| |
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| T |
35081428 |
ttacgcagcctatgct |
35081443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 177
Target Start/End: Original strand, 28258016 - 28258047
Alignment:
| Q |
146 |
attttctacttattcatcttaagagtgaaact |
177 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
28258016 |
attttctacttattcatcttaagagtgaaact |
28258047 |
T |
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