View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2848_low_10 (Length: 546)

Name: NF2848_low_10
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2848_low_10
NF2848_low_10
[»] chr6 (5 HSPs)
chr6 (213-458)||(4183706-4183951)
chr6 (213-458)||(4744545-4744790)
chr6 (458-527)||(4183610-4183679)
chr6 (459-527)||(4744451-4744520)
chr6 (94-143)||(2332690-2332739)
[»] chr1 (8 HSPs)
chr1 (301-458)||(51382140-51382297)
chr1 (262-458)||(51857762-51857958)
chr1 (344-453)||(51221896-51222005)
chr1 (344-396)||(51763692-51763744)
chr1 (352-433)||(25611720-25611801)
chr1 (301-458)||(51781991-51782148)
chr1 (374-438)||(45693604-45693668)
chr1 (481-517)||(51763538-51763574)
[»] scaffold0244 (1 HSPs)
scaffold0244 (106-168)||(16291-16353)
[»] scaffold0171 (1 HSPs)
scaffold0171 (91-168)||(723-800)
[»] scaffold0015 (1 HSPs)
scaffold0015 (308-393)||(41147-41232)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 5e-79; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 213 - 458
Target Start/End: Complemental strand, 4183951 - 4183706
Alignment:
Q  213 ttgatatgacgacgacgacagattgcaaacgaggaggaacctcaaccaaaaccctaacaccactgcctcccaccaactctcctccatttcttccatttga 312  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| || |||||||| ||    
T  4183951 ttgatatgacgacgatgacaggtcgcaaacgaggaggaacctcaaccagaaccctaacacaactgcctcccactaactctcctccgttacttccattcga 4183852  T
Q  313 tcttgtggcagaaatcttatcccttctccctgtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctcttatttccattgattccaaa 412  Q
    |||||||||||||||| ||| |  |||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| |||  ||||||||||    
T  4183851 tcttgtggcagaaatcctatgctgtctccctgtgaaacacctccttcaactccgttgcgtttgcaagtcctggaattctcttatctcccatgattccaaa 4183752  T
Q  413 tttgccatgaagcaccttcgcctgtccacctccaaccacgaccgcc 458  Q
    || |||| ||| ||||||||  ||||||||||||||||||||||||    
T  4183751 ttcgccaagaaccaccttcgtttgtccacctccaaccacgaccgcc 4183706  T

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Target: chr6; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 213 - 458
Target Start/End: Complemental strand, 4744790 - 4744545
Alignment:
Q  213 ttgatatgacgacgacgacagattgcaaacgaggaggaacctcaaccaaaaccctaacaccactgcctcccaccaactctcctccatttcttccatttga 312  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| || |||||||| ||    
T  4744790 ttgatatgacgacgatgacaggtcgcaaacgaggaggaacctcaaccagaaccctaacaccactgcctcccactaactctcctccgttacttccattcga 4744691  T
Q  313 tcttgtggcagaaatcttatcccttctccctgtgaaaca-cctccttaaactcagttgcgtttgcaagtcatggaattctcttatttccattgattccaa 411  Q
    |||||||||||||||| | | |  ||||||||||||||| ||||||| ||||| |||||||||||||||| | |||||||||||| |||  |||||||||    
T  4744690 tcttgtggcagaaatcctctgctgtctccctgtgaaacaccctccttcaactccgttgcgtttgcaagtcct-gaattctcttatctcccatgattccaa 4744592  T
Q  412 atttgccatgaagcaccttcgcctgtccacctccaaccacgaccgcc 458  Q
    ||| |||| ||| ||||||||  ||||||||||||||||||||||||    
T  4744591 attcgccaagaaccaccttcgtttgtccacctccaaccacgaccgcc 4744545  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 458 - 527
Target Start/End: Complemental strand, 4183679 - 4183610
Alignment:
Q  458 cccttgttccacttatctggatgctcaatctcctctatttttagttccgccacatcctttaccagtttca 527  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  4183679 cccttgttctacttatctggatgctcaatctcctctattttcagttccgctgcatcctttaccagtttca 4183610  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 459 - 527
Target Start/End: Complemental strand, 4744520 - 4744451
Alignment:
Q  459 ccttgttccacttatctgg-atgctcaatctcctctatttttagttccgccacatcctttaccagtttca 527  Q
    |||||||| |||||||||| |||| |||||||||||||||| ||||| ||  ||||||||||||||||||    
T  4744520 ccttgttctacttatctgggatgcccaatctcctctattttcagttctgctgcatcctttaccagtttca 4744451  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 2332739 - 2332690
Alignment:
Q  94 ggaatgaaagaactttaaagagggccaatagaatcatccaagaaaggtct 143  Q
    ||||||||||| || | |||||| |||||| |||||||||||||||||||    
T  2332739 ggaatgaaagagctgtgaagaggaccaataaaatcatccaagaaaggtct 2332690  T

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Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 301 - 458
Target Start/End: Complemental strand, 51382297 - 51382140
Alignment:
Q  301 tcttccatttgatcttgtggcagaaatcttatcccttctccctgtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctcttatttcc 400  Q
    |||||| || ||||| |||||||||||| | | ||| ||||| ||||||||||||||| ||||| ||||||| |||||||||||||||| |||||| ||     
T  51382297 tcttccgttcgatctggtggcagaaatcctgtgcctgctccccgtgaaacacctccttcaactccgttgcgtctgcaagtcatggaattatcttatctct 51382198  T
Q  401 attgattccaaatttgccatgaagcaccttcgcctgtccacctccaaccacgaccgcc 458  Q
      ||||||||| || |||| |||||| |||||  |||| |||||||||||||||||||    
T  51382197 catgattccaatttcgccaagaagcaacttcgtttgtcaacctccaaccacgaccgcc 51382140  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 262 - 458
Target Start/End: Original strand, 51857762 - 51857958
Alignment:
Q  262 aaccctaacaccactgcctcccaccaactctcctccatttcttccatttgatcttgtggcagaaatcttatcccttctccctgtgaaacacctccttaaa 361  Q
    ||||| |||||||| |||||| ||||| |||| |||||||||| | || ||||| ||| |||||||  | | ||  ||||| |||||| | |||||| ||    
T  51857762 aacccaaacaccaccgcctcctaccaattctcttccatttctttcgttcgatctcgtgacagaaattctgtgccagctccccgtgaaaaatctccttcaa 51857861  T
Q  362 ctcagttgcgtttgcaagtcatggaattctcttatttccattgattccaaatttgccatgaagcaccttcgcctgtccacctccaaccacgaccgcc 458  Q
    ||| ||||| | ||||||||||||||||||||||| ||   ||||||| ||||  | ||||||||||||||| |||| |||||||||| ||||||||    
T  51857862 ctccgttgcatctgcaagtcatggaattctcttatctctcatgattccgaattcactatgaagcaccttcgcttgtcaacctccaacctcgaccgcc 51857958  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 453
Target Start/End: Complemental strand, 51222005 - 51221896
Alignment:
Q  344 gtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctcttatttccattgattccaaatttgccatgaagcaccttcgcctgtccacct 443  Q
    |||||||||||| || ||||| | ||| | ||||||||||||||||||||||| ||   |||||  || ||||||| |||||| |||||| |||| ||||    
T  51222005 gtgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctctcatgatttaaattttgccaagaagcaacttcgcttgtcaacct 51221906  T
Q  444 ccaaccacga 453  Q
     |||||||||    
T  51221905 tcaaccacga 51221896  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 51763744 - 51763692
Alignment:
Q  344 gtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctcttat 396  Q
    |||||||| |||||| ||||| ||||||| |||||||||||||||||||||||    
T  51763744 gtgaaacatctccttcaactctgttgcgtctgcaagtcatggaattctcttat 51763692  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 433
Target Start/End: Complemental strand, 25611801 - 25611720
Alignment:
Q  352 cctccttaaactcagttgcgtttgcaagtcatggaattctcttatttccattgattccaaatttgccatgaagcaccttcgc 433  Q
    ||||||| || || ||||||| |||||||||||||||||||| || || | |||| |||| |||| || ||| |||||||||    
T  25611801 cctccttcaattctgttgcgtctgcaagtcatggaattctctaatatcgaatgatcccaattttgtcaagaaacaccttcgc 25611720  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 458
Target Start/End: Original strand, 51781991 - 51782148
Alignment:
Q  301 tcttccatttgatcttgtggcagaaatcttatcccttctccctgtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctcttatttcc 400  Q
    |||||| || ||||| || ||||||||| | |  || ||||| |||||||| ||| |||||||| |  | || || |||||||||||||||||||| |||    
T  51781991 tcttccgttcgatctggttgcagaaatcctgtgtctgctccccgtgaaacatctcattaaactccgccgtgtctgtaagtcatggaattctcttatctcc 51782090  T
Q  401 attgattccaaatttgccatgaagcaccttcgcctgtccacctccaaccacgaccgcc 458  Q
      |||||| ||||| || |  || ||| ||||| |||| ||||| |||||||| ||||    
T  51782091 catgattctaaattcgctaaaaaacactttcgcttgtcaacctctaaccacgatcgcc 51782148  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 438
Target Start/End: Complemental strand, 45693668 - 45693604
Alignment:
Q  374 tgcaagtcatggaattctcttatttccattgattccaaatttgccatgaagcaccttcgcctgtc 438  Q
    |||||||| ||||||||||| || || |||||| |||||||||| | ||| ||||||||| ||||    
T  45693668 tgcaagtcgtggaattctctaatctcaattgatcccaaatttgctaagaatcaccttcgcatgtc 45693604  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 517
Target Start/End: Complemental strand, 51763574 - 51763538
Alignment:
Q  481 ctcaatctcctctatttttagttccgccacatccttt 517  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  51763574 ctcaatctcctctattttcagttccgccgcatccttt 51763538  T

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Target: scaffold0244 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 16291 - 16353
Alignment:
Q  106 ctttaaagagggccaatagaatcatccaagaaaggtctaatacgtctgactagcactttggaa 168  Q
    |||| ||||||||||||| ||||||||||||||||||||||||| || ||||| |||||||||    
T  16291 ctttgaagagggccaataaaatcatccaagaaaggtctaatacgcctaactagtactttggaa 16353  T

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Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 723 - 800
Alignment:
Q  91 ttaggaatgaaagaactttaaagagggccaatagaatcatccaagaaaggtctaatacgtctgactagcactttggaa 168  Q
    ||||||||||||||  |||  |||||||||||| ||||||||||||||||| | |||| ||| || || |||||||||    
T  723 ttaggaatgaaagagttttggagagggccaataaaatcatccaagaaaggtttgatacatctcacaagaactttggaa 800  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 308 - 393
Target Start/End: Complemental strand, 41232 - 41147
Alignment:
Q  308 tttgatcttgtggcagaaatcttatcccttctccctgtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctct 393  Q
    |||||||||||||| |||||| |||  |  ||||||||||||  ||||||  || || ||||||| ||||||||||||||||||||    
T  41232 tttgatcttgtggctgaaatcctatgtcgactccctgtgaaattcctcctacaattccgttgcgtctgcaagtcatggaattctct 41147  T

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