View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_18 (Length: 434)
Name: NF2848_low_18
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 130 - 417
Target Start/End: Original strand, 11088778 - 11089065
Alignment:
| Q |
130 |
tggttgaaccaactacagttgaatcgatttacctttgttcaatttgattcaaccagactgtaatacaacaaggatcaaaccgattataaaataaaccgat |
229 |
Q |
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| T |
11088778 |
tggttgaactaactacagttgaatcgatttacctttgttcaatttgattcaaccagactgtaatacaacaaggatcaaaccgattataaaataaaccgat |
11088877 |
T |
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| Q |
230 |
tcccgattcaactagttgaaccatccggtttagttttaaacattgattaaggggcatgattggctgaccaaaataacaatgtgataagaagtggacaaat |
329 |
Q |
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| T |
11088878 |
tcccaattcaactagttgaaccatccggtttagttttaaacattgattaaggggcatgattggctgaccaaaataacaatgtgataagaagtggacaaat |
11088977 |
T |
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| Q |
330 |
tgaataataatattttaattttttgatcaccaatcatgttcttccatgtgagtagagtttagagattgatggttccttaaaacacatg |
417 |
Q |
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| T |
11088978 |
tgaatactaatattttaatttcttgatcaccaatcatgttcatccatgtgagtagagtttagagattgatggttccttaaaacacatg |
11089065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 11088664 - 11088726
Alignment:
| Q |
16 |
attgaatcggtgagacattcagatcttgactcgattggctcaactacgatttaactattagac |
78 |
Q |
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| T |
11088664 |
attgaatcagtgagacattcagatcttgactcgattggttcaactacgattaaactattagac |
11088726 |
T |
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