View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_19 (Length: 426)
Name: NF2848_low_19
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 199 - 417
Target Start/End: Original strand, 15450646 - 15450864
Alignment:
| Q |
199 |
aattccatcctagttcccttcttggatctcttcataagttcgtgacaatgttgttggatggtaggaattatggataaaattatttaaaccaatcagtaaa |
298 |
Q |
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| T |
15450646 |
aattccatcctagttcccttcttggatctcttcataagttcgtgacaatgttgtttgatgttaggaattatggataaaattatttaaaccaatcagtaaa |
15450745 |
T |
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| Q |
299 |
ctttaattaaggggaggtatctggttgatggagtggtcgttgttatgaattcattgacctggctcaaaattctaggagggtgtatctgatttttaaggtg |
398 |
Q |
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| T |
15450746 |
ctttaattagggggaggtatctggttgatggagtggtcgttgttctgaattcattgacctggctcgaaattctaggagggtgtatatgatttttaaggtg |
15450845 |
T |
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| Q |
399 |
gaatgcgaaaaggcctatg |
417 |
Q |
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|||| |||||||||||||| |
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| T |
15450846 |
gaattcgaaaaggcctatg |
15450864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 15450091 - 15450276
Alignment:
| Q |
17 |
ccatgatgtctcggacgattatcccttggtcattcactactcttcccaacatcggggcctaaggttgtttatattcaataactttcggatggctgataaa |
116 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |
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| T |
15450091 |
ccatgatgtctcggacgattgtcccttggtcattcgctactcttcctaacatcggggcctaaggttgtttatattcaatatcttccggatggctgagaaa |
15450190 |
T |
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| Q |
117 |
ggattacataatatggtcattctcaattaggcctccttgtaaactacaaggtggatggctcacattcttaaagagaagttaaaatt |
202 |
Q |
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| T |
15450191 |
ggattacataatatggtcattctcaattaggcctccttgtaaactacaaggtggatggctcacattcttaaagagaagttaaaatt |
15450276 |
T |
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