View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_2 (Length: 914)
Name: NF2848_low_2
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 515 - 899
Target Start/End: Original strand, 29636182 - 29636566
Alignment:
| Q |
515 |
catgtcaattactcctgaggcggggaatgcatacatagataatgaacatattttatcgcggagataaaaagagggaagcactccttgcttccgctccatt |
614 |
Q |
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| T |
29636182 |
catgttaattactcctgaggcgggggattcatacatagataatgaacatattttattgcggagaaaaaaagagggaagtactcctcgctttcgctccatt |
29636281 |
T |
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| Q |
615 |
aacatctccatatggaagttaaggataacattagtatgtctttgaaattgtccttttcttttacgaaataagattataacatttcattagatatcaaatc |
714 |
Q |
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| T |
29636282 |
aacaactccagatggaagttaaggagaacattagtatgtcttggaaattctccttttcttttacgaaacaagattataacatttcattagatatcaaatc |
29636381 |
T |
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| Q |
715 |
acataacatgggagatccaacatcataaatgtgggaggaaattgataatgcggttaccccattatattgaataaatataggtctcaaattgcattagcta |
814 |
Q |
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| T |
29636382 |
acataacatgggggatccaacatcataaatgtgggaggaaattgataatgcggttaccccattatattgaataaatataggtctcaaattgcattagcta |
29636481 |
T |
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| Q |
815 |
ggacacatagactacatagctcaaatagtaccatagatgttcatcatccaatcctaacttaatgagtttaggtgctcatgatagt |
899 |
Q |
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| T |
29636482 |
ggactcatagactacatagctcaaatagtaccatagatgttcatcattcaatcctaacctaatgagtttaggtgctcatgatagt |
29636566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 116 - 313
Target Start/End: Original strand, 29635652 - 29635849
Alignment:
| Q |
116 |
gacatactcaaattgcagcaaaaatggagaacatttgtttcacacccatctactacttcaacccaacaaatcctcttctctctttagtctgccgccgcta |
215 |
Q |
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| T |
29635652 |
gacatactcaaattgctgcaaaaatggagaacatttgtttcacacccatctactacttcaacccaacaaatcctcttctctctttggtctgccgccgcta |
29635751 |
T |
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| Q |
216 |
atgtgcttgtgtttcattcatacgttgttgttcttgtaatattacgtggttcatgggttaacaaaacccaagcccaataaacaaattaacccacacac |
313 |
Q |
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| T |
29635752 |
atgtgcctgtgtttcattcatacgttgttgttcttgtaatattacgtggttcatgggttaacaaaacccaagcccaataaacaaattaacccacacac |
29635849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 391 - 529
Target Start/End: Original strand, 29636035 - 29636173
Alignment:
| Q |
391 |
ttagggagtgaacctattcatccaataaaaagagttgggatcttctccattttacaatatagaggaatgaagtattacatttaaagacatataaacgtgc |
490 |
Q |
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| T |
29636035 |
ttagggagtgaacctattcatccaataaaaagagttgggatcttctccattttacaatataaaggaatgaagtattacatttaaagacatataaacgcgc |
29636134 |
T |
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| Q |
491 |
gcaaagagttatgtcatgtgttgtcatgtcaattactcc |
529 |
Q |
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| T |
29636135 |
gcaaagagttatgtcatgtgttgtcatgtcaattactcc |
29636173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 843 - 884
Target Start/End: Complemental strand, 32216983 - 32216942
Alignment:
| Q |
843 |
taccatagatgttcatcatccaatcctaacttaatgagttta |
884 |
Q |
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| T |
32216983 |
taccatagaagttcatcattcaatcctaatttaatgagttta |
32216942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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