View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2848_low_20 (Length: 414)

Name: NF2848_low_20
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2848_low_20
NF2848_low_20
[»] chr5 (7 HSPs)
chr5 (50-399)||(1499958-1500308)
chr5 (235-381)||(1478735-1478881)
chr5 (237-381)||(1482929-1483073)
chr5 (229-381)||(1487406-1487558)
chr5 (229-399)||(1505695-1505865)
chr5 (229-399)||(1492886-1493056)
chr5 (302-399)||(1509831-1509928)
[»] chr2 (1 HSPs)
chr2 (237-381)||(24163032-24163176)
[»] chr7 (6 HSPs)
chr7 (245-399)||(46706238-46706392)
chr7 (252-399)||(5285026-5285173)
chr7 (229-378)||(5315850-5315999)
chr7 (244-399)||(5311115-5311270)
chr7 (229-399)||(5303214-5303384)
chr7 (243-399)||(5288945-5289101)
[»] chr1 (3 HSPs)
chr1 (252-378)||(44129313-44129439)
chr1 (252-378)||(44133518-44133644)
chr1 (254-378)||(44141940-44142064)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 50 - 399
Target Start/End: Complemental strand, 1500308 - 1499958
Alignment:
Q  50 gtaacttccattatttttatggnnnnnnngaagagaccacactagttatggtataaagctatttaccatatcaaatatacatacatgcatacacatatat 149  Q
    ||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1500308 gtaacttccattatttttatggaaaaaaagaagagaccacactaggtatggtataaagctatttaccatatcaaatatacatacatgcatacacatatat 1500209  T
Q  150 ataactttctgtatttattcttcatataaatagaaacttaggcgagatggaaaatattacataattnnnnnnnnnn-ttgagcatcttatataaccacac 248  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||           |||||||||||||||||| | ||    
T  1500208 ataactttctgtatttattcttcataaagatagaaacttaggcgagatggaaaatattacataattaaaaaaaaaaattgagcatcttatataactatac 1500109  T
Q  249 tatgcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcga 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1500108 tatgcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcga 1500009  T
Q  349 tttccttctcatctcatccaagatgaacaatacggatacactagacatatt 399  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||||||||||    
T  1500008 tttccttctcatctcattcaagatgaacaatacagatgcactagacatatt 1499958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 235 - 381
Target Start/End: Complemental strand, 1478881 - 1478735
Alignment:
Q  235 ttatataaccacactatgcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtcttaagt 334  Q
    ||||||| |||| ||||| | |||||| ||||||||||| ||||||||||||||||  ||||| |||||||| ||  | |||||||||||||| ||||||    
T  1478881 ttatatagccacgctatggagaacaactgtttcaatggtgagtccaggtccaaagccaaacaacacaccccagtcaaggccttcacctgtggttttaagt 1478782  T
Q  335 cgatcttgagtcgatttccttctcatctcatccaagatgaacaatac 381  Q
    |  ||||||| ||||||| ||||||||||||||||||||||||||||    
T  1478781 ccctcttgagccgatttctttctcatctcatccaagatgaacaatac 1478735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 381
Target Start/End: Complemental strand, 1483073 - 1482929
Alignment:
Q  237 atataaccacactatgcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtcttaagtcg 336  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||  ||||| |||||||| ||  | ||||| |||||||||||||| |     
T  1483073 atatagccacactgtgcaaaacaacggtttcaatggtaagtccaggtccaaagccgaacaacacaccccaatcaagcccttctcctgtggtcttaagccc 1482974  T
Q  337 atcttgagtcgatttccttctcatctcatccaagatgaacaatac 381  Q
     |||||||  |||||| ||| ||||||||| ||||| ||||||||    
T  1482973 ctcttgagaagatttctttcgcatctcatctaagataaacaatac 1482929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 229 - 381
Target Start/End: Complemental strand, 1487558 - 1487406
Alignment:
Q  229 agcatcttatataaccacactatgcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtc 328  Q
    ||||||| ||||||||| |||||| | |||||||||||||||||||||||||||||||||||  ||||| || |||||||   ||||||| |||||||||    
T  1487558 agcatctcatataaccatactatggagaacaacagtttcaatggtaagtccaggtccaaagccgaacaacactccccatttaagtccttctcctgtggtc 1487459  T
Q  329 ttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatac 381  Q
    | |||||  |||||||  ||| || ||||||| |||||||| || ||||||||    
T  1487458 tcaagtccctcttgagctgatctctttctcatttcatccaatataaacaatac 1487406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 229 - 399
Target Start/End: Complemental strand, 1505865 - 1505695
Alignment:
Q  229 agcatcttatataaccacactatgcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtc 328  Q
    ||||||| ||||| | |||||| ||||||||||||||||||| |||||||| ||||||||||  || || ||||||||||| |||||||| || || |||    
T  1505865 agcatctcatatagcaacactacgcaaaacaacagtttcaatagtaagtcccggtccaaagccaaataacacaccccattcatgtccttctccggtagtc 1505766  T
Q  329 ttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactagacatatt 399  Q
    || | || ||||||||  |||||| ||||||| ||||| ||||| ||||| ||  || |||| ||||||||    
T  1505765 ttcaatccatcttgagctgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatt 1505695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 399
Target Start/End: Complemental strand, 1493056 - 1492886
Alignment:
Q  229 agcatcttatataaccacactatgcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtc 328  Q
    ||||||||||||| | |||||  |||| |||||||| |||||||||||||| ||||||||||  || |  ||||||||||| || ||||| || || |||    
T  1493056 agcatcttatatagctacactgcgcaagacaacagtctcaatggtaagtcctggtccaaagccgaatagcacaccccattcatgcccttctccggttgtc 1492957  T
Q  329 ttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactagacatatt 399  Q
    || |  | || |||||| |||||| ||||||| ||||||||||| ||||||||  || |||| ||||||||    
T  1492956 ttcaaaccattttgagttgatttctttctcatttcatccaagataaacaatacacatgcacttgacatatt 1492886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 399
Target Start/End: Complemental strand, 1509928 - 1509831
Alignment:
Q  302 ccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactagacatatt 399  Q
    ||||||||  ||||||||||  ||||||||| ||  |||||||  |||||| |||||||||| || ||||||||||||||  || |||| ||||||||    
T  1509928 ccccattcaagtccttcaccaatggtcttaattccctcttgagctgatttctttctcatctcgtctaagatgaacaatacacatgcacttgacatatt 1509831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 381
Target Start/End: Original strand, 24163032 - 24163176
Alignment:
Q  237 atataaccacactatgcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtcttaagtcg 336  Q
    ||||| ||||||| || | |||||  ||||||||||||||||| || |||||||||||||| |||||||||||  | ||||| ||||||||||| ||||     
T  24163032 atatagccacactgtggagaacaatcgtttcaatggtaagtcctggcccaaagcttaacaacacaccccattcaagcccttctcctgtggtctttagtcc 24163131  T
Q  337 atcttgagtcgatttccttctcatctcatccaagatgaacaatac 381  Q
    |||||||| ||||||  ||||||||||||| |||||||| |||||    
T  24163132 atcttgagccgatttgtttctcatctcatctaagatgaataatac 24163176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 245 - 399
Target Start/End: Original strand, 46706238 - 46706392
Alignment:
Q  245 acactatgcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtcttaagtcgatcttgag 344  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||||||  || || |||||||||||  ||||||| ||||| ||||| || | ||||||||    
T  46706238 acactgtgcaaaacaacagtttctatggtaagtcctggtccaaagccaaataacacaccccattcaagtccttctcctgttgtcttcagaccatcttgag 46706337  T
Q  345 tcgatttccttctcatctcatccaagatgaacaatacggatacactagacatatt 399  Q
    | |||||| ||||||| ||||| ||||| ||||| ||  || |||| ||||||||    
T  46706338 ttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatt 46706392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 252 - 399
Target Start/End: Complemental strand, 5285173 - 5285026
Alignment:
Q  252 gcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgattt 351  Q
    |||||||||| ||||||||||||||||| |||||||| |  || ||||||||||||||  ||||||| || || ||||| | ||  | |||||| |||||    
T  5285173 gcaaaacaacggtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctcccgttgtcttcaatccgttttgagttgattt 5285074  T
Q  352 ccttctcatctcatccaagatgaacaatacggatacactagacatatt 399  Q
    | ||||||| ||||||||||| ||||| ||  || |||| ||||||||    
T  5285073 ctttctcatttcatccaagataaacaaaacacatgcacttgacatatt 5285026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 378
Target Start/End: Complemental strand, 5315999 - 5315850
Alignment:
Q  229 agcatcttatataaccacactatgcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtc 328  Q
    ||||||| ||||| |||| ||  |||||||||| ||||||||||||||||| |||||||| |  || ||||||||||||||  ||||||| || || |||    
T  5315999 agcatctcatatagccacgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctcccgttgtc 5315900  T
Q  329 ttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaa 378  Q
    || | ||  |||| ||| |||||| ||||||| ||||| ||||| |||||    
T  5315899 ttcaatccgtctttagttgatttctttctcatttcatctaagataaacaa 5315850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 399
Target Start/End: Complemental strand, 5311270 - 5311115
Alignment:
Q  244 cacactatgcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtcttaagtcgatcttga 343  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||| |  || ||||||||||| ||  ||||||| || || ||||| | ||  | ||||    
T  5311270 cacactacgcaaaacaactgtttcaatggtaagtcctggtccaaaaccaaataatacaccccactcaagtccttctcccgttgtcttcaatccgttttga 5311171  T
Q  344 gtcgatttccttctcatctcatccaagatgaacaatacggatacactagacatatt 399  Q
    || |||||| ||||||| ||||| ||||| ||||| ||  || |||| ||||||||    
T  5311170 gttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatt 5311115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 399
Target Start/End: Complemental strand, 5303384 - 5303214
Alignment:
Q  229 agcatcttatataaccacactatgcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtc 328  Q
    ||||||| ||||| | |||||  |||||||||| |||||||| |||||||| |||||||| |  || || |||||||||||  ||||||| || || |||    
T  5303384 agcatctcatatagcgacactgcgcaaaacaaccgtttcaattgtaagtcctggtccaaaaccaaataacacaccccattcaagtccttctccagttgtc 5303285  T
Q  329 ttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactagacatatt 399  Q
    || |  | ||||| ||| |||||| ||||||| ||||| ||||| ||||| ||  || |||| ||||||||    
T  5303284 ttcaacccatctttagttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatt 5303214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 399
Target Start/End: Original strand, 5288945 - 5289101
Alignment:
Q  243 ccacactatgcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtcttaagtcgatcttg 342  Q
    |||||||| | |||||||||||||||||||||||||| |||||||| |  || || |||||||||||  ||||||| || || ||||| | ||  |||      
T  5288945 ccacactacgtaaaacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattcaagtccttctccagttgtcttcaatccgtctat 5289044  T
Q  343 agtcgatttccttctcatctcatccaagatgaacaatacggatacactagacatatt 399  Q
     || |||||| ||||||| ||||| ||||| ||||| ||  || |||| ||||||||    
T  5289045 ggttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatt 5289101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 378
Target Start/End: Complemental strand, 44129439 - 44129313
Alignment:
Q  252 gcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgattt 351  Q
    ||||||||||||||||||| ||||| || ||||||||||  || || |||||||| ||  ||||||| || |||||||| |||| ||||||||  || ||    
T  44129439 gcaaaacaacagtttcaatagtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcccgtggtcttcagtccatcttgagctgactt 44129340  T
Q  352 ccttctcatctcatccaagatgaacaa 378  Q
    | ||||||| ||||| ||||| |||||    
T  44129339 ctttctcatttcatctaagataaacaa 44129313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 378
Target Start/End: Complemental strand, 44133644 - 44133518
Alignment:
Q  252 gcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgattt 351  Q
    ||||||||||||||||||||||||| || ||||||||||  || || |||||  ||||  ||||||| ||||||||||| | || ||||||||  || ||    
T  44133644 gcaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaattcaagtccttctcctgtggtcttcaatccatcttgagctgactt 44133545  T
Q  352 ccttctcatctcatccaagatgaacaa 378  Q
    | ||||||| ||||| ||||| |||||    
T  44133544 ctttctcatttcatctaagataaacaa 44133518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 378
Target Start/End: Complemental strand, 44142064 - 44141940
Alignment:
Q  254 aaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttcc 353  Q
    ||||||||||||||||||||||| || ||||||||||  || || |||||  | ||  ||||||| || |||||||| | || ||||||||  || |||     
T  44142064 aaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaactcaagtccttctcccgtggtcttcaatccatcttgagctgacttct 44141965  T
Q  354 ttctcatctcatccaagatgaacaa 378  Q
    ||||||| ||||| ||||| |||||    
T  44141964 ttctcatttcatctaagataaacaa 44141940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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