View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2848_low_21 (Length: 410)
Name: NF2848_low_21
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 26268178 - 26267772
Alignment:
| Q |
1 |
aatacgaagtattctaaaattaaaatatatgccacacaaccccataaactaaactaaactaaatcctcttacaacacacaagcatgcgcgcgtgcgcgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
26268178 |
aatacgaagtattctaaaattaaaatatatgccacacaaccccataaactaaactaaactaaatcctctcacaacacacaagcatgcgcgcgtgcgcgcg |
26268079 |
T |
|
| Q |
101 |
cacacacatatgcatgtgattaattatatttacttcacaattcattcatcttttcaattcatagaatattatttaagaatggctaatctaatttcattgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| | |
|
|
| T |
26268078 |
cacacacatatgcatgtgattaattatatttacttcacaattcattcatcttttgaattcatagaatattatttaagaatgactaatctactttcattat |
26267979 |
T |
|
| Q |
201 |
tctttgtcatgagaatgacattgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactatatgtttagctgtagtagttcaagctgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26267978 |
tctttgtcatgagaatgacattgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactatatgtttagctgtagtagttcaagctgaa |
26267879 |
T |
|
| Q |
301 |
gtcatttactattcctaatttaagtttgagaggctatgaagtaattgataatatcaaagaagagctagaaaagaaagatctcgctgtagtttcttgtgat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| || ||| |||||||||| | |
|
|
| T |
26267878 |
gtcatttactattcctaatttaagtttgagaggttacgaagtaattgataacatcaaagaagagctagaaaagaaagatcccgatgtggtttcttgtgct |
26267779 |
T |
|
| Q |
401 |
gatgtcc |
407 |
Q |
| |
|
||||||| |
|
|
| T |
26267778 |
gatgtcc |
26267772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 26265591 - 26265338
Alignment:
| Q |
10 |
tattctaaaattaaaatatatgccacacaaccccataaactaaactaaactaaatcctcttacaacacacaagcatgcgcgcgtgcgcgtgcacacacat |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26265591 |
tattttaaaattaaaatatatgccacacaaccccataaactaaactaaactaaatcctcttacaacacacaagcatgcgcgcgt----------acacac |
26265502 |
T |
|
| Q |
110 |
atgcatgtgattaattatatttacttcacaattcattcatcttttcaattcatagaatattatttaagaatggctaatctaatttcattgttctttgtca |
209 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
26265501 |
atgcctgtgactaattacatttacttcacaattcatacatcttttgaattcatagaatatcatttaagaatgactaatctactttcattgttctttgtca |
26265402 |
T |
|
| Q |
210 |
tgagaatgacattgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactata |
273 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26265401 |
caagaatgatattgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactata |
26265338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 405
Target Start/End: Complemental strand, 26264680 - 26264557
Alignment:
| Q |
282 |
tgtagtagttcaagctgaagtcatttactattcctaatttaagtttgagaggctatgaagtaattgataatatcaaagaagagctagaaaagaaagatct |
381 |
Q |
| |
|
|||||||||||| ||| ||| |||||||| ||||||||| ||||| ||||||||||||||||||| ||| |||| |||| |||||||||||||| ||| |
|
|
| T |
26264680 |
tgtagtagttcatgctcaagccatttactgctcctaatttgagtttaagaggctatgaagtaattgttaacatcagagaatagctagaaaagaaatgtct |
26264581 |
T |
|
| Q |
382 |
cgctgtagtttcttgtgatgatgt |
405 |
Q |
| |
|
| ||| ||||| |||| |||||| |
|
|
| T |
26264580 |
tggtgtggtttcgtgtgctgatgt |
26264557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 26264793 - 26264699
Alignment:
| Q |
140 |
attcattcatcttttcaattcatagaatattatttaagaatggctaatctaatttcattgttctttgtcatgagaatgacattgatttgtttcaaa |
235 |
Q |
| |
|
||||||||||||||| |||| || || || |||||| |||| ||||| || ||||| |||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
26264793 |
attcattcatcttttaaattt-tacaagatcatttaaaaatgactaatatactttcactgttctttgtcatgggaatgacattgacttgtttcaaa |
26264699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 26266322 - 26266253
Alignment:
| Q |
10 |
tattctaaaattaaaatatatgccacacaaccccataaactaaactaaactaaatcctcttacaacacac |
79 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| | |||||||| |||||||||| |||| || |||||| |
|
|
| T |
26266322 |
tattctaaaactaaaatatatgacacacaaccctacaaactaaaataaactaaattctctcaccacacac |
26266253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 26267241 - 26267185
Alignment:
| Q |
7 |
aagtattctaaaattaaaatatatgccacacaaccccataaactaaactaaactaaa |
63 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||||| | ||||||||||||| |||| |
|
|
| T |
26267241 |
aagtattctataattaaaatatataacatacaaccctacaaactaaactaaagtaaa |
26267185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 7 - 405
Target Start/End: Original strand, 23574169 - 23574570
Alignment:
| Q |
7 |
aagtattctaaaattaaaatatatgccacacaaccccataaactaaactaaactaaa---------tcctcttacaacacacaagcatgcgcgcgtgcg- |
96 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |||||| || ||||| ||| | ||||||||| |
|
|
| T |
23574169 |
aagtattctaaaactaaaatatatgccacacaaccctacaaactaaactaaactaaactaaactaatcctctcacgacacat--gcaag-gcgcgtgcgt |
23574265 |
T |
|
| Q |
97 |
cgtgcacacacatatgcatgtgattaattatatttacttcacaattcattcatcttttcaattcatagaatattatttaagaatggctaatctaatttca |
196 |
Q |
| |
|
|| ||||||| |||||||||| |||||||||||||||||| ||||| ||||||||| || || |||||||| |||||||||||||||||| ||||| |
|
|
| T |
23574266 |
cgcctacacacacatgcatgtgactaattatatttacttcacgattcactcatcttttaaaatcttagaatatcatttaagaatggctaatc---tttca |
23574362 |
T |
|
| Q |
197 |
ttgttctttgtcatgagaatgacattgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactatatgtttagctgtagtagttcaagc |
296 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||| | | || ||||||||| || |
|
|
| T |
23574363 |
ccgttctttgtcttgagaatgacattgatttgtttc-aaattgagagtaataaacggcttgagcgtgaactactacggctaaacatgcagtagttcatgc |
23574461 |
T |
|
| Q |
297 |
tgaagtcatttactattcctaatttaagtttgagaggctatgaagtaattgataatatcaaagaagagctagaaaagaaagatctcgctgtagtttcttg |
396 |
Q |
| |
|
| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || | ||| |||||||| |
|
|
| T |
23574462 |
tcaagtcatgtactactcctaatttaagtttgagaggctatgaagtaattgataacatcaaagaagagctagaaaagaaatgtcccaatgtggtttcttg |
23574561 |
T |
|
| Q |
397 |
tgatgatgt |
405 |
Q |
| |
|
|| |||||| |
|
|
| T |
23574562 |
tgttgatgt |
23574570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University