View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_22 (Length: 393)
Name: NF2848_low_22
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 35335491 - 35335126
Alignment:
| Q |
13 |
tcatcatgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccaccagcctcctgctcatgcc |
112 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35335491 |
tcatcatgctaaacctccaacccatcatcgccatcaacaccctcctactcattcccctgttcaacctccaacgcatcaccaccagcctcctgctcatgcc |
35335392 |
T |
|
| Q |
113 |
cctgttcacaaacatgttccagtacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaaccac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35335391 |
cctgttcacaaacatgttccagtacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcgcctattcaaccac |
35335292 |
T |
|
| Q |
213 |
caacacacccccaccctcctgctcacgcccctgctcacaaacacattccaattcaccctccattccacgcccatgtacctactaaatctccaactcccaa |
312 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35335291 |
caacacatcaccaccctcctgctcacgcccctgctcacaaacacattccaattcaccctccattccacgcccatgtacctactaaatctccaactcccaa |
35335192 |
T |
|
| Q |
313 |
ccctcacccccaccatcatcacactcctgctcttgcccctgctcacacaccactgcgttcaatttt |
378 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35335191 |
ccctcacccccgccatcatcacactcctgctcttgcccctgctcacacaccactgcgttcaatttt |
35335126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 35335619 - 35335378
Alignment:
| Q |
17 |
catgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccaccagcctcctgctcatgcccctg |
116 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||| | ||||||||||||| |||| ||| || ||||||||||||| ||| |
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| T |
35335619 |
catgctaaacctccaacccatcaccgtcatcaacacactcctgctcattcccctattcaacctccaacacatcgccatcactctcctgctcatgctccta |
35335520 |
T |
|
| Q |
117 |
ttcacaaacatgttccagtacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaaccaccaac |
216 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |||||| ||||| ||||||| ||||| |
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| T |
35335519 |
ttcacaaacatgttccagttcatcctcctcatcatgctaaacctccaacccatcatcgccatcaacaccctcctactcattcccctgttcaacctccaac |
35335420 |
T |
|
| Q |
217 |
---acacccccaccctcctgctcacgcccctgctcacaaaca |
255 |
Q |
| |
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|||| ||| ||||||||||| ||||||| ||||||||| |
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| T |
35335419 |
gcatcaccaccagcctcctgctcatgcccctgttcacaaaca |
35335378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 35335755 - 35335549
Alignment:
| Q |
13 |
tcatcatgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccaccagcctcctgctcatgcc |
112 |
Q |
| |
|
||||||| ||||||| |||||||||| || |||||||| ||||||||||| ||| ||||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
35335755 |
tcatcatactaaacccccaacccatcgccatcatcaacatcctcctgctcacgcccctgttcaacctccaacacatcaccaccactctcctgctcatgcc |
35335656 |
T |
|
| Q |
113 |
cctgttcacaaacatgttccagtacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaaccac |
212 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||| ||||||||||| |||||| ||||||| | ||| ||||| ||||||||||||| | |
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| T |
35335655 |
cctgttcacaaacatgttccagttcatcctcctcaccatgctaaacctccaacccatcaccgtcatcaacacactcctgctcattcccctattcaacctc |
35335556 |
T |
|
| Q |
213 |
caacaca |
219 |
Q |
| |
|
||||||| |
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|
| T |
35335555 |
caacaca |
35335549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 16592029 - 16592096
Alignment:
| Q |
22 |
taaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatc |
89 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||| |||| |
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|
| T |
16592029 |
taaacctccaacccatcaccaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatc |
16592096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 16602474 - 16602546
Alignment:
| Q |
17 |
catgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatc |
89 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||||||||| |||| |
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|
| T |
16602474 |
catgctaaacctccaacccatccctaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatc |
16602546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 16591906 - 16592004
Alignment:
| Q |
19 |
tgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccaccagcctcctgctcatgcccctgtt |
118 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||||||| ||| | |||||||| || | ||||| ||| |||||| ||||||||||| || |
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|
| T |
16591906 |
tgctaaacctccaacccgtcaccaccaccaacaccctcctgctcatgcccctcttcaaccttcatcccatcaacac---cctccttctcatgcccctatt |
16592002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 16592030 - 16592091
Alignment:
| Q |
155 |
aaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaaccaccaac |
216 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||| ||||||||||| ||||||| ||||| |
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|
| T |
16592030 |
aaacctccaacccatcaccaccatcaacaccctcctgctcatgcccctgttcaacctccaac |
16592091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 16602460 - 16602541
Alignment:
| Q |
135 |
tacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaaccaccaac |
216 |
Q |
| |
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|||| ||| ||| |||||| ||||||||||| |||| | ||||||||| ||||| ||||||||||| ||||||| ||||| |
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| T |
16602460 |
tacacccttctcaccatgctaaacctccaacccatccctaccatcaacaccctcctgctcatgcccctgttcaacctccaac |
16602541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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