View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_24 (Length: 385)
Name: NF2848_low_24
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_24 |
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| [»] chr2 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Original strand, 33082011 - 33082388
Alignment:
| Q |
8 |
aagcaaaggcacaatatcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgacgttcaaatccaggctataatagttt |
107 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
33082011 |
aagcaaaggcacaaaatcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgaccttcaaatccaggctataatagctt |
33082110 |
T |
|
| Q |
108 |
cttctctctctttgcaatcttcctcagtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctctgccttcaactgatccct |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
33082111 |
cttctctctctttgcaatcttcctcagtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctcggacttcaactgatccct |
33082210 |
T |
|
| Q |
208 |
tgtttgaaccctctcttcccatttcactgcgtttttctgctgccttttcttccgtttctgtatacttctctttatcagtttaggatcatcatgaacctta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33082211 |
tgtttgaaccctctcttcccatttcactgcgtttttctgctgccttttcttccgtttctgtatacttctctttatcagtttaggatcatcatgaacctta |
33082310 |
T |
|
| Q |
308 |
attcccgaagctctcttcattgccgctttccatgcttcctttttagcaatagcttcacccttctcaggatcattcttc |
385 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33082311 |
attcccgaagctctcttcattgccgctttccatgcttcctttttagcaatagcttcacccttctcaggatcattcttc |
33082388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Original strand, 33091871 - 33092248
Alignment:
| Q |
8 |
aagcaaaggcacaatatcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgacgttcaaatccaggctataatagttt |
107 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
33091871 |
aagcaaaggcacaaaatcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgaccttcaaatccaggctataatagctt |
33091970 |
T |
|
| Q |
108 |
cttctctctctttgcaatcttcctcagtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctctgccttcaactgatccct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
33091971 |
cttctctctctttgcaatcttcctcagtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctcggacttcaactgatccct |
33092070 |
T |
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| Q |
208 |
tgtttgaaccctctcttcccatttcactgcgtttttctgctgccttttcttccgtttctgtatacttctctttatcagtttaggatcatcatgaacctta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33092071 |
tgtttgaaccctctcttcccatttcactgcgtttttctgctgccttttcttccgtttctgtatacttctctttatcagtttaggatcatcatgaacctta |
33092170 |
T |
|
| Q |
308 |
attcccgaagctctcttcattgccgctttccatgcttcctttttagcaatagcttcacccttctcaggatcattcttc |
385 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33092171 |
attcccgaagctctcttcattgccgctttccatgcttcctttttagcaatagcttcacccttctcaggatcattcttc |
33092248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Original strand, 33099367 - 33099744
Alignment:
| Q |
8 |
aagcaaaggcacaatatcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgacgttcaaatccaggctataatagttt |
107 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
33099367 |
aagcaaaggcacaaaatcaataaatttcacagccaagttagccagaaataccattaagaaatccttccttacgaccttcaaatccaggctataatagctt |
33099466 |
T |
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| Q |
108 |
cttctctctctttgcaatcttcctcagtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctctgccttcaactgatccct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
33099467 |
cttctctctctttgcaatcttcctcagtttctcatcattaatcttctcagctatatttgctgaccttttttagttgtttctcggacttcaactgatccct |
33099566 |
T |
|
| Q |
208 |
tgtttgaaccctctcttcccatttcactgcgtttttctgctgccttttcttccgtttctgtatacttctctttatcagtttaggatcatcatgaacctta |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33099567 |
tgtttgaaccctctcttcccatttcactgcgtttttctgctgccttttcttccgtttctgtatacttctctttatcagtttaggatcatcatgaacctta |
33099666 |
T |
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| Q |
308 |
attcccgaagctctcttcattgccgctttccatgcttcctttttagcaatagcttcacccttctcaggatcattcttc |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33099667 |
attcccgaagctctcttcattgccgctttccatgcttcctttttagcaatagcttcacccttctcaggatcattcttc |
33099744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 56 - 385
Target Start/End: Original strand, 33072318 - 33072652
Alignment:
| Q |
56 |
taccattaagaaatccttccttacgacgttcaaatccaggctataatagtttcttctctctctttgcaatcttcctcagtttctcatcattaatcttctc |
155 |
Q |
| |
|
|||||||| |||| ||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
33072318 |
taccattacgaaaaccttccttacgaccttcaaatccaggccgtaatagcttcttctctctctttgcaatcttcctcagtttcttatcattaatcctctc |
33072417 |
T |
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| Q |
156 |
agctatatttgctgaccttttttagttgtttctctgccttcaactgatcccttgtttgaaccctctcttcccatttcactgcgtttttctgctgcctttt |
255 |
Q |
| |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| || ||||| || |
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| T |
33072418 |
agctatatttgcaaacctttttttgttgtttctctgccttcaactgatcccttgattgaaccctctcttcccatttctctgcatttttatgttgcctctt |
33072517 |
T |
|
| Q |
256 |
cttccgtttctgtatacttctctttatcagtttaggatca-------tcatgaaccttaattcccgaagctctcttcattgccgctttccatgcttcctt |
348 |
Q |
| |
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||||| |||||| ||||| || |||||| |||||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||| |
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| T |
33072518 |
cttccttttctg--tacttttccttatcaatttaggatcatcatgattcatgaaccttaattcccgaagctctctttgttactactttccatgcttcctt |
33072615 |
T |
|
| Q |
349 |
tttagcaatagcttcacccttctcaggatcattcttc |
385 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| |
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| T |
33072616 |
cttagcaatagcttcacccttctcagaatcattcttc |
33072652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 44 - 385
Target Start/End: Original strand, 3931197 - 3931537
Alignment:
| Q |
44 |
gttagccagaaataccattaagaaatccttccttacgacgttcaaatccaggctataatagtttcttctctctctttgcaatcttcctcagtttctcatc |
143 |
Q |
| |
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||||||||||| | | ||||| ||| |||||||| |||| |||||| || ||| |||||| || ||||||||||||||||||||||||| ||||| ||| |
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| T |
3931197 |
gttagccagaactgctattaataaaaccttccttgcgaccttcaaagcccggccgtaatagctttttctctctctttgcaatcttcctcattttcttatc |
3931296 |
T |
|
| Q |
144 |
attaatcttctcagctatatttgctgaccttttttagttgtttctctgccttcaactgatcccttgtttgaaccctctcttcccatttcactgcgttttt |
243 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| | ||| ||||||||||||||||||||||||| |||||| ||||||||||||||| |||| ||||| |
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| T |
3931297 |
attaatcctctcagctatattatctgaccttttct-tttgcttctctgccttcaactgatcccttgattgaactctctcttcccatttctctgcattttt |
3931395 |
T |
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| Q |
244 |
ctgctgccttttcttccgtttctgtatacttctctttatcagtttaggatcatcatgaaccttaattcccgaagctctcttcattgccgctttccatgct |
343 |
Q |
| |
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| ||| |||||| || ||||| ||| ||||||||||||| ||||||||||| ||||||||||| |||||||| | |||||| |||||||||||| |
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| T |
3931396 |
ttcttgctgcttcttcaccttatgtatgcttttctttatcagtttgggatcatcatggaccttaattcctgaagctctgtccattgctgctttccatgct |
3931495 |
T |
|
| Q |
344 |
tcctttttagcaatagcttcacccttctcaggatcattcttc |
385 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
3931496 |
tcctttttagcaatagcttcacccttctcaggatcattcttc |
3931537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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