View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_30 (Length: 363)
Name: NF2848_low_30
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_30 |
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| [»] scaffold0168 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 27 - 336
Target Start/End: Original strand, 26417622 - 26417934
Alignment:
| Q |
27 |
atgtctcgaaacaatatttgttaattaaaa-gttgacattgcggatgcaggttattgtgtattttaaaatttattttttataaaataaatatagtagaca |
125 |
Q |
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| T |
26417622 |
atgtctcgaaacaatatttgttagttaaaaagttgacattacggatgcgggttattgtgtattttaaa-tttattttttataaaataaatatagtagaca |
26417720 |
T |
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| Q |
126 |
tgtggattgatctgggttgtaggattcatctaagggacgagattgagccaaagttatgtaatgttggtgctctaaagtcacc---aattccggagttttg |
222 |
Q |
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| T |
26417721 |
tgtggattgatatgggttgtaggattcatctaagggatgagattgagccaaagttatgtaatgttggtgctctaaagtcaccaccaattccggagttgtg |
26417820 |
T |
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| Q |
223 |
gcatggccgaaagttgttccgctccgtctccggctccggcgaagcctgttgtggttagggggaaacgaaaaccctttcattctccactcgatgcttttcg |
322 |
Q |
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| T |
26417821 |
gcatggccgaaagttgttccgctccgtctccggctccggcgaagcctgttgtggttagggtgaaacgaaaaccctttcattctccactcgatgctttctg |
26417920 |
T |
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| Q |
323 |
taagttacttaata |
336 |
Q |
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| T |
26417921 |
taagttacataata |
26417934 |
T |
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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 12288671 - 12288739
Alignment:
| Q |
251 |
tccggctccggcgaagcctgttgtggttagggggaaacgaaaaccctttcattctccactcgatgcttt |
319 |
Q |
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| T |
12288671 |
tccggctccatcgaagcctgttgtcgttagggttaaacgaaaaccctctcattctccactcgatgcttt |
12288739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 24402 - 24440
Alignment:
| Q |
148 |
gattcatctaagggacgagattgagccaaagttatgtaa |
186 |
Q |
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| T |
24402 |
gattcatctaagggatgagattaagccaaagttatgtaa |
24440 |
T |
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