View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2848_low_31 (Length: 360)

Name: NF2848_low_31
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2848_low_31
NF2848_low_31
[»] chr8 (1 HSPs)
chr8 (18-354)||(7290472-7290808)
[»] chr3 (5 HSPs)
chr3 (265-354)||(40640593-40640683)
chr3 (266-345)||(47930634-47930714)
chr3 (264-345)||(45879466-45879548)
chr3 (266-345)||(49359596-49359676)
chr3 (267-348)||(19606879-19606961)
[»] chr5 (3 HSPs)
chr5 (267-354)||(10237415-10237503)
chr5 (265-333)||(22616493-22616562)
chr5 (262-349)||(36055838-36055926)
[»] chr2 (7 HSPs)
chr2 (263-354)||(41643869-41643961)
chr2 (265-354)||(6177774-6177864)
chr2 (270-354)||(18947557-18947642)
chr2 (265-354)||(34441880-34441970)
chr2 (297-349)||(18059326-18059378)
chr2 (309-354)||(18779360-18779405)
chr2 (265-354)||(19073356-19073447)
[»] chr7 (3 HSPs)
chr7 (297-354)||(22955271-22955328)
chr7 (266-354)||(23402330-23402419)
chr7 (297-354)||(37854253-37854310)
[»] chr4 (1 HSPs)
chr4 (265-348)||(2704511-2704595)
[»] chr1 (3 HSPs)
chr1 (297-345)||(16127552-16127600)
chr1 (264-345)||(13876887-13876969)
chr1 (304-349)||(10758264-10758309)
[»] scaffold0200 (1 HSPs)
scaffold0200 (297-354)||(24776-24833)
[»] chr6 (1 HSPs)
chr6 (265-354)||(19631748-19631838)


Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 7290472 - 7290808
Alignment:
Q  18 atataaaatttatttaatatccaagatatgggagtgacatcgtgaagatttggaagttcaaatgaaggatacatatatacatgggacttcaccattgaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  7290472 atataaaatttatttaatatccaagatatgggagtgacatcgtgaagatttggaagttcaaatgaaggatatatatatacatgggacttcaccattgatt 7290571  T
Q  118 ttttcttaaaaatatcgacctagatgtcaaggaaacaaaaccacgaatcaatttgatccttattaattcaaatggacagaatttaacatgtttcttggat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7290572 ttttcttaaaaatatcgacctagatgtcaaggaaacaaaaccacgaatcaatttgatccttattaattcaaatggacagaacttaacatgtttcttggat 7290671  T
Q  218 tacttgattcaacaagcatattctcattctacacgataaatatatataggaaaattctatgatgaagtcgtgcaaatgattttctggtgacgttaaatgg 317  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  7290672 tacttgattcaacaagcatattctcattctacacgattaatagatataggaaaattctatggtgaagtcatgcaaatgattttctggtgacgttaaatgg 7290771  T
Q  318 tcaattattgatcatttgtgtgtttaattcatctcac 354  Q
    | ||| |||||||||||||| ||||||||||| ||||    
T  7290772 tgaatcattgatcatttgtgcgtttaattcatgtcac 7290808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 40640683 - 40640593
Alignment:
Q  265 aggaaaattctatgatgaagtcgtgcaaatga-ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaattcatctcac 354  Q
    |||||||||||||| ||||||| ||  ||||| ||||||||||| |||||||||||||| ||||| ||||||||| |||||| ||| ||||    
T  40640683 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgagcatttgtgtatttaatccatgtcac 40640593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 47930714 - 47930634
Alignment:
Q  266 ggaaaattctatgatgaagtcgtgcaaatgatttt-ctggtgacgttaaatggtcaattattgatcatttgtgtgtttaat 345  Q
    ||||||||||||| ||||||| || |||||||||| ||||||| ||||||||  |||| ||||| ||||||||| ||||||    
T  47930714 ggaaaattctatggtgaagtcatgaaaatgatttttctggtgaagttaaatgaccaatcattgaacatttgtgtatttaat 47930634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 345
Target Start/End: Complemental strand, 45879548 - 45879466
Alignment:
Q  264 taggaaaattctatgatgaagtcgtgcaaatga-ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaat 345  Q
    ||||||||||||||| ||||||| ||  ||||| ||||||||| | ||||||||| |||| ||||| ||||||||| ||||||    
T  45879548 taggaaaattctatgctgaagtcatgagaatgacttttctggtaaagttaaatggccaatcattgagcatttgtgtatttaat 45879466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 49359676 - 49359596
Alignment:
Q  266 ggaaaattctatgatgaagtcgtgcaaatga-ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaat 345  Q
    ||||||||||||| ||||||| || |||||| |||| | |||| ||||||||| |||| ||||| ||||||||| ||||||    
T  49359676 ggaaaattctatggtgaagtcatgaaaatgactttttttgtgaagttaaatggccaatcattgaacatttgtgtatttaat 49359596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 348
Target Start/End: Complemental strand, 19606961 - 19606879
Alignment:
Q  267 gaaaattctatgatgaagtcgtgcaaatga-ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaattca 348  Q
    |||||||||||| ||||||  |  |||||| ||||||||||| ||||||||  |||| ||||| ||||||||| |||||||||    
T  19606961 gaaaattctatggtgaagttataaaaatgacttttctggtgaagttaaatgaccaatgattgagcatttgtgtatttaattca 19606879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 267 - 354
Target Start/End: Original strand, 10237415 - 10237503
Alignment:
Q  267 gaaaattctatgatgaagtcgtgcaaatga-ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaattcatctcac 354  Q
    |||||||||||  ||||||| || |||||| |||||| |||| |||||||||||||| ||||| ||||||||| |||||||||| ||||    
T  10237415 gaaaattctattgtgaagtcatgaaaatgacttttctagtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatttcac 10237503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 22616493 - 22616562
Alignment:
Q  265 aggaaaattctatgatgaagtcgtgcaaatga-ttttctggtgacgttaaatggtcaattattgatcatt 333  Q
    |||||||||||||| ||||||| || |||||| ||||||||||| ||||||||| |||| ||||| ||||    
T  22616493 aggaaaattctatggtgaagtcatgaaaatgacttttctggtgaagttaaatggccaatcattgagcatt 22616562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 36055926 - 36055838
Alignment:
Q  262 tataggaaaattctatgatgaagtcgtgcaaatga-ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaattcat 349  Q
    |||||||||||| |||| ||| ||| ||  ||||| |||||| |||| |||||||||||||| ||||| ||||||||  ||||||||||    
T  36055926 tataggaaaattttatggtgatgtcatgagaatgacttttcttgtgaagttaaatggtcaatcattgagcatttgtgaatttaattcat 36055838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 354
Target Start/End: Original strand, 41643869 - 41643961
Alignment:
Q  263 ataggaaaattctatgatgaagtcgtgcaaatga-ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaattcatctcac 354  Q
    |||| ||||||||||| ||||||| ||  ||||| |||| |||||| |||||||||||||| ||||| ||||||||| |||||||||| ||||    
T  41643869 atagaaaaattctatggtgaagtcatgataatgacttttttggtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcac 41643961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 6177774 - 6177864
Alignment:
Q  265 aggaaaattctatgatgaagtcgtgcaaatga-ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaattcatctcac 354  Q
    |||||||||||| |  |||||| ||  ||||| ||||||||||| |||||||||||||| ||||| ||||||||| |||||||||| ||||    
T  6177774 aggaaaattctacggcgaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcac 6177864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 354
Target Start/End: Complemental strand, 18947642 - 18947557
Alignment:
Q  270 aattctatgatgaagtcgtgcaaatga-ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaattcatctcac 354  Q
    ||||||||| ||||||| || |||| | ||||||||||| |||||||||||||| ||||| ||||||||| |||||| ||| ||||    
T  18947642 aattctatggtgaagtcatgaaaataacttttctggtgaagttaaatggtcaatcattgaacatttgtgtatttaatccatgtcac 18947557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 34441970 - 34441880
Alignment:
Q  265 aggaaaattctatgatgaagtcgtgcaaatga-ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaattcatctcac 354  Q
    |||||||||||||| ||||||| || |||||| |||| |||| | ||||||||  ||||||||||  |||||||| |||||||||| ||||    
T  34441970 aggaaaattctatggtgaagtcatgaaaatgacttttttggtaaagttaaatgaccaattattgaatatttgtgtatttaattcatgtcac 34441880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 18059378 - 18059326
Alignment:
Q  297 ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaattcat 349  Q
    |||| |||||| ||||||||||||||||||||  |||||||| ||||||||||    
T  18059378 ttttttggtgatgttaaatggtcaattattgaatatttgtgtatttaattcat 18059326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 18779405 - 18779360
Alignment:
Q  309 gttaaatggtcaattattgatcatttgtgtgtttaattcatctcac 354  Q
    |||||||||||||| ||||| ||||||||| |||||||||| ||||    
T  18779405 gttaaatggtcaatcattgagcatttgtgtatttaattcatgtcac 18779360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 19073356 - 19073447
Alignment:
Q  265 aggaaaattctatgatgaagtcgtgcaaatgattttct--ggtgacgttaaatggtcaattattgatcatttgtgtgtttaattcatctcac 354  Q
    |||||||||||||| ||||||  ||  ||||||||| |  ||||| |||||||||||||| |||||  |||||||| |||||| ||| ||||    
T  19073356 aggaaaattctatggtgaagttatgagaatgattttttttggtgaagttaaatggtcaatcattgagaatttgtgtatttaatccatgtcac 19073447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 22955328 - 22955271
Alignment:
Q  297 ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaattcatctcac 354  Q
    ||||||||||| |||||||||||||||||||| ||||||||| |||||| ||| ||||    
T  22955328 ttttctggtgaagttaaatggtcaattattgaacatttgtgtatttaatccatgtcac 22955271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 23402419 - 23402330
Alignment:
Q  266 ggaaaattctatgatgaagtcgtgcaaatga-ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaattcatctcac 354  Q
    |||||||||||||  |||||| ||  ||||| ||||||||||| |||||||||||||| ||||| ||| ||||| |||||||||| ||||    
T  23402419 ggaaaattctatggcgaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgaacatctgtgtatttaattcatgtcac 23402330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 37854310 - 37854253
Alignment:
Q  297 ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaattcatctcac 354  Q
    |||||||||||  ||||||||||||||||||| ||||||||| |||||| ||| ||||    
T  37854310 ttttctggtgaaattaaatggtcaattattgagcatttgtgtatttaatccatgtcac 37854253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 348
Target Start/End: Original strand, 2704511 - 2704595
Alignment:
Q  265 aggaaaattctatgatgaagtcgtgcaaatga-ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaattca 348  Q
    ||||||||| |||| ||||||| || |||||| ||||||||||| |||||||| ||||| |||||  |||||||| |||||||||    
T  2704511 aggaaaattttatggtgaagtcatgaaaatgacttttctggtgaagttaaatgatcaatcattgaatatttgtgtatttaattca 2704595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 16127552 - 16127600
Alignment:
Q  297 ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaat 345  Q
    ||||||||||| |||||||||||||| ||||||||||||||| ||||||    
T  16127552 ttttctggtgaagttaaatggtcaatcattgatcatttgtgtatttaat 16127600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 345
Target Start/End: Complemental strand, 13876969 - 13876887
Alignment:
Q  264 taggaaaattctatgatgaagtcgtgcaaatga-ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaat 345  Q
    ||||||||||||||| ||||||  || |||||| |||| |||||| |||||||| ||||| |||||  |||||||| ||||||    
T  13876969 taggaaaattctatggtgaagttatgaaaatgacttttatggtgaagttaaatgatcaatcattgagtatttgtgtatttaat 13876887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 10758309 - 10758264
Alignment:
Q  304 gtgacgttaaatggtcaattattgatcatttgtgtgtttaattcat 349  Q
    |||| |||||||||||||| ||||| ||||||||| ||||||||||    
T  10758309 gtgaagttaaatggtcaatcattgagcatttgtgtatttaattcat 10758264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 24833 - 24776
Alignment:
Q  297 ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaattcatctcac 354  Q
    |||||||||||  ||||||||||||| ||||| ||||||||| |||||||||| ||||    
T  24833 ttttctggtgaaattaaatggtcaatcattgagcatttgtgtatttaattcatgtcac 24776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 19631748 - 19631838
Alignment:
Q  265 aggaaaattctatgatgaagtcgtgcaaatga-ttttctggtgacgttaaatggtcaattattgatcatttgtgtgtttaattcatctcac 354  Q
    |||||||||||||| ||||||| |   ||||| ||||||||||| ||||||||  |||| ||||| ||||||||| |||||| ||| ||||    
T  19631748 aggaaaattctatggtgaagtcataagaatgacttttctggtgaagttaaatgaccaatcattgaacatttgtgtatttaatccatgtcac 19631838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University