View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_34 (Length: 358)
Name: NF2848_low_34
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 41380222 - 41379875
Alignment:
| Q |
1 |
tgagctaggttttgtaattttgtcgaagatgttcatagaatgagaccatgacattataggtggtgaaatccttgtatctagagacccagaacttctgttg |
100 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41380222 |
tgagctaggttttgtaattttgttgaagatgtacatagaatgagaccatgacattataggtggtgaaatccttgtatctagagacccagaacttctgttg |
41380123 |
T |
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| Q |
101 |
tagaacaccacataaaaattcctttcattgcttggaatggaagcaaagtgtagatcttcaaggaacccataatgcaggatttcgttaaacctccagacta |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41380122 |
tagaacaccacatgaaaattcctttcattgcttggaatggaagcaaagtgtagatcttcaaggaacccataatgcaggatttcgttaaacctccagacta |
41380023 |
T |
|
| Q |
201 |
gggcatcattgtcatcattcattctactttaaattgtgaataaataatgtttctaagagtgttaggtcgaaatagttgagtaacttaaatccatacccgt |
300 |
Q |
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| T |
41380022 |
gggcatcattgtcatcattcattctactttaaattgtgaataaacaatgtttctaagagtgttaggtcgaaatagttgagtaacttaaatccatactctt |
41379923 |
T |
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| Q |
301 |
caggaataattgagaccaattttccgaatcgaataggtcaaatctgtg |
348 |
Q |
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| T |
41379922 |
caggaataattgagaccaattttccgaatcaaataggtcaaatatgtg |
41379875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 8033996 - 8034319
Alignment:
| Q |
1 |
tgagctaggttttgtaattttgtcgaagatgttcatagaatgagaccatgacat--tataggtggtgaaatccttgtatctagagacccagaacttctgt |
98 |
Q |
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| T |
8033996 |
tgagctaggttttgtaattttgttgaagatgttcatagaatgagaccatgacatcatataggtggtgaaatccttgtatccagagacccagaacttatgt |
8034095 |
T |
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| Q |
99 |
tgtagaacaccacataaaaattcctttcattgcttggaatggaagcaaagtgtagatcttcaaggaacccataatgcaggatttcgttaaacctccaga- |
197 |
Q |
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|| ||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||| | |
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| T |
8034096 |
tgcagaacaccatatgaaaattcctttcattgcttagaatggaagcaaagtgtagatcttcaaggaactcataatacaggatttggttaaacctccaaat |
8034195 |
T |
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| Q |
198 |
ctagggcatcattgtcatcattcattctactttaaattgtgaataaataatgtttctaagagtgttaggtcgaaatagttgagtaacttaaatccatacc |
297 |
Q |
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| T |
8034196 |
ttagggcatcattgccatcattcattctactttaaattgtgaataaataatgtttctaagagtgtttggtcgaaatagttgagtaacttaaatccatacc |
8034295 |
T |
|
| Q |
298 |
cgtcaggaataattgagaccaatt |
321 |
Q |
| |
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|| |||||||||||||| ||||| |
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| T |
8034296 |
agttaggaataattgagatcaatt |
8034319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 7969784 - 7969588
Alignment:
| Q |
1 |
tgagctaggttttgtaattttgtcgaagatgttcatagaatgagaccatgacattata--ggtggtgaaatccttgtatctagagacccagaacttctgt |
98 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| |
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| T |
7969784 |
tgagctaggttttgtaattttgttgaagatgttcatagaatgagaccatgacattatataggtggtgaaatccttgtatccagagacccagaacttatgt |
7969685 |
T |
|
| Q |
99 |
tgtagaacaccacataaaaattcctttcattgcttggaatggaagcaaagtgtagatcttcaaggaacccataatgcaggatttcgttaaacctcca |
195 |
Q |
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|| |||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| |
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| T |
7969684 |
tgcagaacaccacatgaaaattcctttcattgcttagaatggaagcaaagtgtaaatcttcaaggaacctataatgcaggatttggttaaacctcca |
7969588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 7969580 - 7969520
Alignment:
| Q |
261 |
gttaggtcgaaatagttgagtaacttaaatccatacccgtcaggaataattgagaccaatt |
321 |
Q |
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|||||||||||||||||||||||| |||||||||||| || |||||||||||||| ||||| |
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| T |
7969580 |
gttaggtcgaaatagttgagtaacataaatccataccagttaggaataattgagatcaatt |
7969520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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