View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_4 (Length: 702)
Name: NF2848_low_4
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 4e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 132 - 327
Target Start/End: Complemental strand, 44515260 - 44515056
Alignment:
| Q |
132 |
cctatcaaaattatttatagagatagtaatgtggggtgttacatcctc---------ccctccttaaataattttttcctcaaaattgacctaatcttaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
44515260 |
cctatcaaaattatttatagagatagtaatgtggggtgttacatccccgggtcccccccccccttaaataattttgtcctcaaaattgacctaatcttaa |
44515161 |
T |
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| Q |
223 |
attaaatatattttccaaacaactacattaagaacaatgggccccaaatactcatacccttagattaaatacagaatgtaactaggttcaaggaatatat |
322 |
Q |
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| T |
44515160 |
attaaatatattttccaaacaactacattaagaacaatgggtcccaaatactcatacccttagattaaatacagaatgtaactaggttcaaggaatatat |
44515061 |
T |
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| Q |
323 |
gataa |
327 |
Q |
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||||| |
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| T |
44515060 |
gataa |
44515056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 44515374 - 44515318
Alignment:
| Q |
18 |
tcatgagcaacaatagcaagctagaacaggtttaattcaaccaaacaccaagtctag |
74 |
Q |
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| T |
44515374 |
tcataagcaacaatagcaagctagaacaggtttaattcaactaaacaccaagtctag |
44515318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 44509679 - 44509645
Alignment:
| Q |
132 |
cctatcaaaattatttatagagatagtaatgtggg |
166 |
Q |
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| T |
44509679 |
cctatcaaagttatttatagagatagtaatgtggg |
44509645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 324 - 491
Target Start/End: Complemental strand, 1140570 - 1140404
Alignment:
| Q |
324 |
ataactgtttctttctttctaaactatttggttgtcattgattggatgcagggactacaaccaaatgaactggttttagaagaagattgcaaggatgact |
423 |
Q |
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|||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
1140570 |
ataaatgtttctttctttataa-ctatttggttgtcattgattggatgcagggactacaaccaaatgaactgattttatgagaagattgcaaggatgact |
1140472 |
T |
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| Q |
424 |
caaactaactttcacatgtatttctcttttgatattaaaaaagaaacattcacactagagagagatgg |
491 |
Q |
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| T |
1140471 |
caaactaactttcacatgaatttctcttttgatattaaaaaagaaacattcacactagagagagatgg |
1140404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 490 - 595
Target Start/End: Complemental strand, 1140356 - 1140251
Alignment:
| Q |
490 |
ggaattgtacagccgtctctgttgctgcagaatccgcacagcagttgtctttgaaacgtcggcctttcacctttaaccataggcgaaaagaaaccgtcca |
589 |
Q |
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|||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1140356 |
ggaaatgtacaaccatctccgttgctgcagaatccgcacagcagttgtctttgaaacgtcgacctttcacctttaaccataggcgaaaagaaaccgtcca |
1140257 |
T |
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| Q |
590 |
ttaaat |
595 |
Q |
| |
|
|||||| |
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|
| T |
1140256 |
ttaaat |
1140251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 597 - 696
Target Start/End: Complemental strand, 1139723 - 1139624
Alignment:
| Q |
597 |
ttcttcaattatatacgattaacaatttcaaaactggtatgaatcttcattgtcatttgggattctcttttgaattttaagatcattttattcatctcac |
696 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| |||| |
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| T |
1139723 |
ttcttcaattatatacgattaacaatttcaaaattgatatgaatcttcattgtcatttgagattttcttttgaattttaagattattttattcatatcac |
1139624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 26505341 - 26505297
Alignment:
| Q |
132 |
cctatcaaaattatttatagagatagtaatgtggggtgttacatc |
176 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
26505341 |
cctatcaaaattatttatagagatagtaatatgggatgttacatc |
26505297 |
T |
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