View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_40 (Length: 334)
Name: NF2848_low_40
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_40 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 25 - 334
Target Start/End: Complemental strand, 48254787 - 48254478
Alignment:
| Q |
25 |
gtgtgttcagttctgtggtgacaaaaattgttattaacttgaaattttgctgactgaaatttgtaggagctatataatcttggtgggagaacatttatgg |
124 |
Q |
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| T |
48254787 |
gtgtgttcagttctgtggtgacaaaaattattattaacttgaaattttgctgactgaaatttgtaggagctatataatcttggtgggagaacatttatgg |
48254688 |
T |
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| Q |
125 |
tgcttaatcttgcaccagtagggtgctacccttcattcttagtagaacttcctcataatagttcggaccttgacgaatttggatgcatggtttcttacaa |
224 |
Q |
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| T |
48254687 |
tgcttaatcttgcaccagtagggtgctatccttcattcttagtagaacttcctcataatagttcggaccttgacgaatttggatgcatggtttcttacaa |
48254588 |
T |
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| Q |
225 |
caatgcagtagtggactataacaaaatgttgaaagagtcattgaaacaaaccagagaaagtctctcagatgcttctgtcatatatgtcgatacctacacc |
324 |
Q |
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| T |
48254587 |
caatgcagtagtggactataacaaaatgttgaaagagtcattgaaacaaaccagagaaagtatctcagatgcttctgtcatatatgtcgatacctacacc |
48254488 |
T |
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| Q |
325 |
gttctgttgg |
334 |
Q |
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| T |
48254487 |
gttctgttgg |
48254478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 299
Target Start/End: Original strand, 10499539 - 10499723
Alignment:
| Q |
115 |
acatttatggtgcttaatcttgcaccagtagggtgctacccttcattcttagtagaacttcctcataatagttcggaccttgacgaatttggatgcatgg |
214 |
Q |
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| T |
10499539 |
acatttatggtattaaatcttggtccagttggatgctaccctggatatttggtggagcttcctcatactagttctgacttagatgaacatggatgcataa |
10499638 |
T |
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| Q |
215 |
tttcttacaacaatgcagtagtggactataacaaaatgttgaaagagtcattgaaacaaaccagagaaagtctctcagatgcttc |
299 |
Q |
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| T |
10499639 |
ttacttataacaatgctgtagatgattacaacaaattgttgaaagagacattgactcaaactagaaaaagtttatcagatgcttc |
10499723 |
T |
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