View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_41 (Length: 331)
Name: NF2848_low_41
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_41 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 41812013 - 41811700
Alignment:
| Q |
18 |
caatcctgtcttcaagtgctctctgaacttgctgaaacttctcttccaactttctaaagctctcttcctcttggtttgacaggcaaagctttacctcaag |
117 |
Q |
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| T |
41812013 |
caatcctgtcttcaagtgctctctgaacttgctgaaacttttcttccacctttctaaagctctcttcctcttggtttgacaggcaaagctttacctcaag |
41811914 |
T |
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| Q |
118 |
attcatgacattttcaagcaaagagctgacctcatctcctttctcttccaggtctcttttcagttcttcaacttggtgttccaaatcagctaccatctga |
217 |
Q |
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| T |
41811913 |
attcatgacattttcaagcaaagagctgacctcatctcctttctcttccaggtctcttttcagttcttcaacttggtgttccaaatcagctaccatctga |
41811814 |
T |
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| Q |
218 |
tcttttgaatcaatgtcttcaagaaacatttctgccatttttctcatcttccactccgcacgtttaagtttgacctgacagtcattataccaactatcaa |
317 |
Q |
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| T |
41811813 |
tcttttgaatcaatgtcttcaagaaacatttctgccatttttctcatcttccactccgcacgtttaagtttgacctgacagtcactataccaactatcaa |
41811714 |
T |
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| Q |
318 |
cgtgtttatattct |
331 |
Q |
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| T |
41811713 |
cgtgtttatattct |
41811700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 88 - 331
Target Start/End: Complemental strand, 41798673 - 41798430
Alignment:
| Q |
88 |
ttggtttgacaggcaaagctttacctcaagattcatgacattttcaagcaaagagctgacctcatctcctttctcttccaggtctcttttcagttcttca |
187 |
Q |
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| T |
41798673 |
ttggtttgacaggcgaagctttacctcaagattcctgacattctcaaacaaagtgctaacctcatctcctttctcttccaggtctcttttcaggtcttca |
41798574 |
T |
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| Q |
188 |
acttggtgttccaaatcagctaccatctgatcttttgaatcaatgtcttcaagaaacatttctgccatttttctcatcttccactccgcacgtttaagtt |
287 |
Q |
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| T |
41798573 |
acttggttttccaaatcagttaccatctgatcttttgacccaatgccttcacgaaactcttctgccatttcttccattttcctctctgcaacttcaagtt |
41798474 |
T |
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| Q |
288 |
tgacctgacagtcattataccaactatcaacgtgtttatattct |
331 |
Q |
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| T |
41798473 |
tgaccttccattcattaaaccaactatcaatttgtttatattct |
41798430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 88 - 269
Target Start/End: Complemental strand, 41805066 - 41804885
Alignment:
| Q |
88 |
ttggtttgacaggcaaagctttacctcaagattcatgacattttcaagcaaagagctgacctcatctcctttctcttccaggtctcttttcagttcttca |
187 |
Q |
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| T |
41805066 |
ttggtttgacaagcgaagcttttccccaagattctcgacattctcaagcaaaaaggtgatgttatttcctttcttgtccaggtcttttttcaggtcttca |
41804967 |
T |
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| Q |
188 |
acttggtgttccaaatcagctaccatctgatcttttgaatcaatgtcttcaagaaacatttctgccatttttctcatcttcc |
269 |
Q |
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| T |
41804966 |
acttggtgttccaaatcagcaaccatctgatcttttgacccaatgccttgaagaaactcttccgccattatttccatcttcc |
41804885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 41798776 - 41798708
Alignment:
| Q |
18 |
caatcctgtcttcaagtgctctctgaacttgctgaaacttctc-ttccaactttctaaagctctcttcct |
86 |
Q |
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| T |
41798776 |
caatcctgtcttcaagttctctctgaacttgctgaaac-tctcgttccgcctttctaaagctctcttcct |
41798708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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