View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_44 (Length: 314)
Name: NF2848_low_44
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_44 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 184 - 314
Target Start/End: Original strand, 16528246 - 16528376
Alignment:
| Q |
184 |
tcagtatgctttttatatatagatatagattataaagcgtcatcgtaaaagtgttcaagtagaagacgcaaaagataaaaacaactgaaacataaaatct |
283 |
Q |
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| T |
16528246 |
tcagtatgctttttatatataggtatagattataaagcgtcatcgtaaaagtgttgaagtagaagacgcaaaagataaaaacgactgaaacataaaatct |
16528345 |
T |
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| Q |
284 |
gtatttaatcaagatagatgataaaatcaaa |
314 |
Q |
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| T |
16528346 |
gtatttaatcaagatagacgataaaatcaaa |
16528376 |
T |
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Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 16528062 - 16528153
Alignment:
| Q |
1 |
cagagacgattatatgaacagtggagaca--gcacggataagatagaaaaaacacagaaattagttacgtacattgaggttcctgtctgtcc |
90 |
Q |
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| T |
16528062 |
cagagacgattatatgaacagtggagacaaagcacggataagatagaaaaaacacagaaattagttacgtacattgaggttcctgtctgtcc |
16528153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 16569740 - 16569823
Alignment:
| Q |
231 |
aaagtgttcaagtagaagacgcaaaagataaaaacaactgaaacataaaatctgtatttaatcaagatagatgataaaatcaaa |
314 |
Q |
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| T |
16569740 |
aaagtgttcaagtaaaagacgcaaaagataaaaaccaatgaaacataaaatctttatttaatcaagatagatgataaaatcaaa |
16569823 |
T |
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