View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_45 (Length: 313)
Name: NF2848_low_45
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_45 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 313
Target Start/End: Original strand, 46762949 - 46763252
Alignment:
| Q |
10 |
aagaatatggttagaaagttttttaatttcaaaagcaaatgtgaagatattcaagcagatgctgttgtttatggaggttagtatctttgttttttcttca |
109 |
Q |
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| T |
46762949 |
aagaaaatggttagaaagttttttaatttcaaaagcaaatgtgaagatattcaagcagatgctgttgtttatggaggttagtatctttgttttttcttca |
46763048 |
T |
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| Q |
110 |
aaattcactttttaatagtgatcaatttcaacaatttattcttcaattattatctttgttgaataataagttagattgctacaatttcttggcatccaaa |
209 |
Q |
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| T |
46763049 |
aaattcactttttaatagtgatcaatttcaacaatttattcttcaattattatctttgttgaataataagttagattgctacaatttcttggcatccaaa |
46763148 |
T |
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| Q |
210 |
taaactcagttactgttttctttctttaggaggtgaggttgaatatggaagtaggaatagtttctctgagagagaaccatgcacaatcaaaaagagcaaa |
309 |
Q |
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| T |
46763149 |
taaactcagttactgttttccttctttaggaggtgaggttgaatatggaagtaggaatagcttctctgagagagaaccatgcacaatcaaaaagagcaaa |
46763248 |
T |
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| Q |
310 |
acag |
313 |
Q |
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|||| |
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| T |
46763249 |
acag |
46763252 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 1083582 - 1083638
Alignment:
| Q |
257 |
gaagtaggaatagtttctctgagagagaaccatgcacaatcaaaaagagcaaaacag |
313 |
Q |
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| T |
1083582 |
gaagcaggagtagtttgtctgagagagagccaagcacaatcaaaaagagcaaaacag |
1083638 |
T |
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