View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_5 (Length: 689)
Name: NF2848_low_5
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 36048239 - 36048605
Alignment:
| Q |
1 |
tatatcggtgaaacaaatggtatcactcgttcttactacaaagatgacgacctaacattatcaattggacaataaacaagagccgataaatagaagctta |
100 |
Q |
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| T |
36048239 |
tatatcggtgaaacaaatggtatcactcgttcttactactatgatgacgacctaacattatcaattggacaataaacaagagccgataaatagaagctta |
36048338 |
T |
|
| Q |
101 |
tgaaattactcgtccttactaccctaaccttatttatcgatcaagtaacaaactaataaggaaaacaaatatga------gtgagtgctgaaacgagaac |
194 |
Q |
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| T |
36048339 |
tgaaattactcgtccttactaccctaaccttat----cgatcaagtaacaaactaataaggaaaacaaatatgaatatgagtgagtgctgaaacgagaac |
36048434 |
T |
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| Q |
195 |
ccatgtaaat------caatcttaaatcacaccataccctaacaatcagatgtaccaatcctatgtactacacttttaatcaatggtgtgatcacccttt |
288 |
Q |
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| T |
36048435 |
ccatgtgaatgtgaatcaatcttaaatcacaccataccctaacaatcagatgtaccaatcctatgtactacacttttaatcaatggtgtgatcacccttt |
36048534 |
T |
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| Q |
289 |
ttctaagaaacaaggcccacatatgaacacgaaatcacacaattgcccaaaccccaaataaaagaccttat |
359 |
Q |
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| T |
36048535 |
ttctaagaaacaaggcccacatatgaacacgaaatcacacaattgcccaaaccccaaataaaagaccttat |
36048605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 438 - 526
Target Start/End: Original strand, 36048684 - 36048772
Alignment:
| Q |
438 |
acaattacccgcgcaggttccaatttcaccatgaccgtcatgatgtccgctcccattgacgtacgtctttccctaacactcacgaacga |
526 |
Q |
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| T |
36048684 |
acaattacccgcgcaggttccaatttcaccatgaccgtcatgatgtccgctcccattgacgtacgtcttcccctaacactcacggacga |
36048772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 628 - 673
Target Start/End: Original strand, 36048874 - 36048919
Alignment:
| Q |
628 |
gtgtttcaatttttagggctttggtaattggtactatggtggatcc |
673 |
Q |
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| T |
36048874 |
gtgtttcaatttttagggctttggtaattggtactatggtggatcc |
36048919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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