View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2848_low_52 (Length: 301)

Name: NF2848_low_52
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2848_low_52
NF2848_low_52
[»] chr1 (1 HSPs)
chr1 (7-298)||(46817522-46817819)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 298
Target Start/End: Original strand, 46817522 - 46817819
Alignment:
Q  7 tggaattggaagtgttaaggttgtgttagaacaggaagatgaaaaggggatttatagatagaagacattgataaaa-gaagtgaagattattagtatgta 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46817522 tggaattggaagtgttaaggttgtgttagaacaggaagatgaaaaggggatttatagatagaagacattgataaaaagaagtgaagattattagtatgta 46817621  T
Q  106 tgatggttggttaagaagttcaactaccatatctaatcaatgcgaaatgtaagagtttaactgatttaagtaggtaggatttgcatgatgtggcctctgc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46817622 tgatggttggttaagaagttcaactaccatatctaatcaatgcgaaatgtaagagtttaactgatttaagtaggtaggatttgcatgatgtggcatctgc 46817721  T
Q  206 agaacacaatttgggctttggctaagcattt-----ttagattaaatgtttataaagtggcatccaaaatgacctactttgattaagcatcacatatt 298  Q
    |||||||||||||||||||||||||||||||     ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46817722 agaacacaatttgggctttggctaagcatttttaaattaaattaaatgtttataaagtggcatccaaaatgacctactttgatttagcatcacatatt 46817819  T

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