View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_57 (Length: 284)
Name: NF2848_low_57
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_57 |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 43619836 - 43619551
Alignment:
| Q |
1 |
gagatcacgaaaatgcaaatccaaatcgtgtcagatttccgatctcagcaataaacggaccttcgattcgacgatttcacaaaggnnnnnnnn---gctt |
97 |
Q |
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| T |
43619836 |
gagatcacgaaaatccaaatccaattcgtgtcagatttccgatcttagcaataaacggaccttcgattcgacgatttcacaaaggaaaaaaaaaacgctt |
43619737 |
T |
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| Q |
98 |
tctcaagagcttcgttgtcggtggcccaggcaagtccaccaacaaagcattggtattcaacttccgccatggaaatcggaaaagaaaattggcaattgat |
197 |
Q |
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| T |
43619736 |
tctcaagagcttcgttgtcggtggcccaggcaagtccaccaacaaagcattggtattcaacttccgccatggaaatcgggaaagaaaattggcaattgat |
43619637 |
T |
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| Q |
198 |
ttaaaatagaggagaagaatggatgaaaagaaattacagaagagggaaataaattttctaagaagagagatgaaaagtatgggttca |
284 |
Q |
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| T |
43619636 |
gaaaaatagaggagaagaatgaatgaaaagaaattaca-aagagggaaaggaattttctgagaagagagatgaaaagtatggattca |
43619551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 43619960 - 43619904
Alignment:
| Q |
184 |
aattggcaattgatttaaaatagaggagaagaatggatgaaaagaaattacagaaga |
240 |
Q |
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| T |
43619960 |
aattgacaattgatgaaaaatagaggagaaaaatggaggaaaagaaattacagaaga |
43619904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 34080490 - 34080205
Alignment:
| Q |
1 |
gagatcacgaaaatgcaaatccaaatcgtgtcagatttccgatctcagcaataaacggaccttcgattcgacgatttcac-aaaggnnnnnnnn---gct |
96 |
Q |
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| T |
34080490 |
gagatcacgaaaattcaaatccaaatcgtgtcagatttccgatctcagcaataaacagaccttcgattcgacgatttcaccaaaggaaaaaaaaaacggt |
34080391 |
T |
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| Q |
97 |
ttctcaagagcttcgttgtcggtggcccaggcaagtccaccaacaaagcattggtattcaacttccgccatggaaatcggaaaagaaaattggcaattga |
196 |
Q |
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| T |
34080390 |
ttctcaagagcttcgttgt--gtggaccaggcaagtccaccaacaaagcattggtattcaacttccgccatggaaatcgggaaagaaaattggcaattga |
34080293 |
T |
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| Q |
197 |
tttaaaatagaggagaagaatggatgaaaagaaattacagaagagggaaataaattttctaagaagagagatgaaaagtatgggttca |
284 |
Q |
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| T |
34080292 |
tgaaaaatagatgagaagaatggatgaaaagaaattacagaagagggaaaggaattttctgagaagagagatgaaaagtatgggttca |
34080205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 184 - 278
Target Start/End: Complemental strand, 34080600 - 34080506
Alignment:
| Q |
184 |
aattggcaattgatttaaaatagaggagaagaatggatgaaaagaaattacagaagagggaaataaattttctaagaagagagatgaaaagtatg |
278 |
Q |
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| T |
34080600 |
aattgacaattgatgaaaaatagaggagaagaatggaggaaaagaaattacagaagaagaaaatgaactttctgagaagagagatgaaaagtatg |
34080506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 184 - 284
Target Start/End: Original strand, 16362384 - 16362484
Alignment:
| Q |
184 |
aattggcaattgatttaaaatagaggagaagaatggatgaaaagaaattacagaagagggaaataaattttctaagaagagagatgaaaagtatgggttc |
283 |
Q |
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| T |
16362384 |
aattgacaattgatgaaaaatagaggagaagaatggatgaaaagaaactacagaagagggaaaggaattttctgagaagagagatgaaaagtatgggttc |
16362483 |
T |
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| Q |
284 |
a |
284 |
Q |
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| T |
16362484 |
a |
16362484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 16359927 - 16359827
Alignment:
| Q |
184 |
aattggcaattgatttaaaatagaggagaagaatggatgaaaagaaattacagaagagggaaataaattttctaagaagagagatgaaaagtatgggttc |
283 |
Q |
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| T |
16359927 |
aattggcaattgatgaaaaatagaggagaagaatggatgaaaagaaactacagaagagggaaaggaattttctgagaagaaagatgaaaagtgtgggttc |
16359828 |
T |
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| Q |
284 |
a |
284 |
Q |
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| T |
16359827 |
a |
16359827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 26374683 - 26374605
Alignment:
| Q |
94 |
gctttctcaagagcttcgttgtcggtggcccaggcaagtccaccaacaaagcattggtattcaacttccgccatggaaa |
172 |
Q |
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| T |
26374683 |
gctttctcgagagcttcgttgtcggtggcccatgcaagacctccgacgaagcaccggtattcaacatcagccattgaaa |
26374605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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