View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_6 (Length: 637)
Name: NF2848_low_6
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 19 - 621
Target Start/End: Original strand, 9794690 - 9795292
Alignment:
| Q |
19 |
gtttggtaccaaacctttttcaatcatttgatccactatctctttccctttaccaaatctaccactcagaaacaaaacccttgctaccagataatagcta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
9794690 |
gtttggtaccaaacctttttcaatcatttgatccactatctctttccctttaccaaatctaccactcaaaaacaaaacccttgacaccagataatagcta |
9794789 |
T |
|
| Q |
119 |
acccaatctggagcaacaccagatttgttcattgcttcaagtatttgacaagattccttaactcttctagtcttccccaaacaagaaagcaaaatgttgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9794790 |
acccaatctggagcaacaccagatttgttcattgcttcaagtatttgacaagattccttaactcttctagtcttccccaaacaagaaagcaaaatgttgt |
9794889 |
T |
|
| Q |
219 |
aactgattgaagttggaaaaaccttataagacctcatctccatcatcacattcaaagcttccggcataagtccggaaggattatttctgagatttctttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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|
| T |
9794890 |
aactgattgaagttggaaaaaccttataagacctcatctccatcatcacattcaaagcttccagcacaagtccggaaggattatttctgagatttctttc |
9794989 |
T |
|
| Q |
319 |
acaaaggcacctaaggaatgtattatagcaaactaaatctggggttaccccatttgtcttcatctcttgaataattctcctagattcctttacattcctc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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|
| T |
9794990 |
acaaaggcacctaaggaatgtattatagcaaactaaatctggggttaccccatttgtcttcatctcttgaataattctccaagattccttcacattcctc |
9795089 |
T |
|
| Q |
419 |
tccagagaccaaccataaagaagacttctataaacacaaggtagcgctcctttaatcttgtctttgtgatgccaagctacaccttcagctctcttagcat |
518 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
9795090 |
tccaaagaccaaccataaagaagacttctataaacacaaggtagcactcctttaatcttgtctttgtgatgccaaactacaccttcagctctcttagcat |
9795189 |
T |
|
| Q |
519 |
gccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttatccaaattcttgaaaatacccaatgcttcgtc |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9795190 |
gccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttatccaaattcttgaaaatacccaatgcttcgtc |
9795289 |
T |
|
| Q |
619 |
ttc |
621 |
Q |
| |
|
||| |
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|
| T |
9795290 |
ttc |
9795292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 19 - 621
Target Start/End: Complemental strand, 45146345 - 45145743
Alignment:
| Q |
19 |
gtttggtaccaaacctttttcaatcatttgatccactatctctttccctttaccaaatctaccactcagaaacaaaacccttgctaccagataatagcta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
45146345 |
gtttggtaccaaacctttttcaatcatttgatccactatctctttccctttaccaaatctaccactcataaacaaaacccttgtcaccagataatagcta |
45146246 |
T |
|
| Q |
119 |
acccaatctggagcaacaccagatttgttcattgcttcaagtatttgacaagattccttaactcttctagtcttccccaaacaagaaagcaaaatgttgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45146245 |
acccaatctggagcaacaccagatttgttcattgcttcaagtatttgacaagattccttaactcttctagtcttccccaaacaagaaagcaaaatgttgt |
45146146 |
T |
|
| Q |
219 |
aactgattgaagttggaaaaaccttataagacctcatctccatcatcacattcaaagcttccggcataagtccggaaggattatttctgagatttctttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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|
| T |
45146145 |
aactgattgaagttggaaaaaccttataagacctcatctccatcatcacattcaaagcttcctgcacaagtccggaaggattatttctgagatttctttc |
45146046 |
T |
|
| Q |
319 |
acaaaggcacctaaggaatgtattatagcaaactaaatctggggttaccccatttgtcttcatctcttgaataattctcctagattcctttacattcctc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
45146045 |
acaaaggcacctaaggaatgtattatagcaaactatatctggggttaccccatttgtcttcatctcttgaataattctcctagattccttcacattcctc |
45145946 |
T |
|
| Q |
419 |
tccagagaccaaccataaagaagacttctataaacacaaggtagcgctcctttaatcttgtctttgtgatgccaagctacaccttcagctctcttagcat |
518 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
45145945 |
tccatagaccaaccataaagaagacttctataaacacaaggtagctctcctttaatcttgtctttgtgatgccaatctacaccttcagctctcttagcat |
45145846 |
T |
|
| Q |
519 |
gccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttatccaaattcttgaaaatacccaatgcttcgtc |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45145845 |
gccctttagagcaaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttatccaaattcttgaaaatacccaatgcttcgtc |
45145746 |
T |
|
| Q |
619 |
ttc |
621 |
Q |
| |
|
||| |
|
|
| T |
45145745 |
ttc |
45145743 |
T |
|
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