View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_60 (Length: 273)
Name: NF2848_low_60
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 40453815 - 40454071
Alignment:
| Q |
1 |
caaaaagaatgctcaagtgcttcatgaagatgaagataaacattcatctaaacagtattcaagctcctctgttccaaagactagttctacaaaccaggtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40453815 |
caaaaagaatgctcaagtgcttcatgaagatgaagataaacattcatctaaacagtattcaagctcctctgttccaaagtctagttctacaaaccaggtt |
40453914 |
T |
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| Q |
101 |
agtatctcttttctctctgtgtgtaaattatttcacatgtgtataagcaagtttttcattgtatagtatagacaatggacttgagtgtttcttttgaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453915 |
agtatctcttttctctctgtgtgtaaattatttcacatgtgtataagcaagtttttcattgtatagtatagacaatggacttgagtgtttcttttgaatg |
40454014 |
T |
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| Q |
201 |
aattgtgttgcaggttgtggtgttgagggtttctctgcattgtaaaggttgtgaagg |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40454015 |
aattgtgttgcaggttgtggtgttgagggtttctctgcattgtaaaggttgtgaagg |
40454071 |
T |
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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 28229081 - 28229182
Alignment:
| Q |
1 |
caaaaagaatgctcaagtgcttcatgaagatgaagataaacattcatctaaacagtattcaagctcctctgttccaaagactagttctacaaaccaggtt |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
28229081 |
caaaaagaatgctcaagtgcttcgtgaagatgaagataaacatttatctaaaccttgttcaagctcatctgttccaaaatctagttctacaaaccaggtt |
28229180 |
T |
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| Q |
101 |
ag |
102 |
Q |
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|| |
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| T |
28229181 |
ag |
28229182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 257
Target Start/End: Original strand, 28229217 - 28229382
Alignment:
| Q |
112 |
tctctctgtgtgtaaattatttcacatgtgtataagcaagtttttcattgtatagtatagacaatggacttgagtg---tttc----------------- |
191 |
Q |
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||||||| | ||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |
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| T |
28229217 |
tctctctctctgtgaattatttcacatgtgtataagcaactttttcattgtatagtctagacaatggacttgagtgttctttcatcgtgtttgttgggat |
28229316 |
T |
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| Q |
192 |
ttttgaatgaattgtgttgcaggttgtggtgttgagggtttctctgcattgtaaaggttgtgaagg |
257 |
Q |
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| T |
28229317 |
ttttgaatgaattttgttgcaggttgtggtgttgagggtttctctgcattgtaaaagttgtgaagg |
28229382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 29145551 - 29145598
Alignment:
| Q |
210 |
gcaggttgtggtgttgagggtttctctgcattgtaaaggttgtgaagg |
257 |
Q |
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|||||||||||| |||||||||||| ||||||| ||||| |||||||| |
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| T |
29145551 |
gcaggttgtggtattgagggtttctttgcattgcaaagggtgtgaagg |
29145598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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