View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2848_low_66 (Length: 257)

Name: NF2848_low_66
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2848_low_66
NF2848_low_66
[»] chr7 (5 HSPs)
chr7 (20-140)||(22069088-22069207)
chr7 (137-222)||(22068974-22069059)
chr7 (28-66)||(22087663-22087701)
chr7 (187-222)||(22087005-22087040)
chr7 (28-66)||(22062703-22062741)


Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 22069207 - 22069088
Alignment:
Q  20 gtgccttttttggagaattggagctgtaacgctgaaccctaatacttgtgnnnnnnnnnnnnngacaaaccctaatacttttgttgtttgacgaaaacaa 119  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||             ||||||||||| |||||||||||||||||||||||||    
T  22069207 gtgccgtttttggagaattggagctgtaacgctgaaccctaatacttgtgttttttattttt-gacaaaccctagtacttttgttgtttgacgaaaacaa 22069109  T
Q  120 ataaagatgtgtattagtgga 140  Q
    ||||||||||||||| |||||    
T  22069108 ataaagatgtgtatttgtgga 22069088  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 22069059 - 22068974
Alignment:
Q  137 tggaagacattttctcttttggataagtttgattccatannnnnnnnctataacaaacaaatgatatactttctctccaacaaaca 222  Q
    |||||||||||||||||||||||||||||| ||||||||        ||||||||||||| |||||||||||||||||||||||||    
T  22069059 tggaagacattttctcttttggataagtttcattccatattttttttctataacaaacaattgatatactttctctccaacaaaca 22068974  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 22087701 - 22087663
Alignment:
Q  28 tttggagaattggagctgtaacgctgaaccctaatactt 66  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  22087701 tttggagaattggagctgaaacgctgaaccctaatactt 22087663  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 22087040 - 22087005
Alignment:
Q  187 taacaaacaaatgatatactttctctccaacaaaca 222  Q
    |||||||||| |||||||||||||||||||||||||    
T  22087040 taacaaacaattgatatactttctctccaacaaaca 22087005  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 22062741 - 22062703
Alignment:
Q  28 tttggagaattggagctgtaacgctgaaccctaatactt 66  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  22062741 tttggtgaattggagctgaaacgctgaaccctaatactt 22062703  T

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