View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2848_low_67 (Length: 256)

Name: NF2848_low_67
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2848_low_67
NF2848_low_67
[»] chr4 (42 HSPs)
chr4 (11-239)||(21660111-21660339)
chr4 (11-239)||(21668875-21669103)
chr4 (11-120)||(28635696-28635805)
chr4 (27-120)||(51948480-51948573)
chr4 (28-120)||(37109335-37109427)
chr4 (27-122)||(19680771-19680866)
chr4 (11-97)||(7949421-7949507)
chr4 (11-113)||(12793878-12793980)
chr4 (11-97)||(13015450-13015536)
chr4 (56-122)||(24827823-24827889)
chr4 (11-120)||(14451713-14451821)
chr4 (11-120)||(39509070-39509179)
chr4 (56-120)||(9241037-9241101)
chr4 (56-120)||(19238589-19238653)
chr4 (56-120)||(47044717-47044781)
chr4 (69-121)||(51250547-51250599)
chr4 (35-120)||(37274450-37274536)
chr4 (28-97)||(38869791-38869860)
chr4 (69-110)||(56236940-56236981)
chr4 (28-120)||(8306485-8306577)
chr4 (11-115)||(13901747-13901851)
chr4 (45-113)||(43728402-43728470)
chr4 (56-120)||(55427212-55427276)
chr4 (28-115)||(7292782-7292869)
chr4 (69-120)||(12821968-12822019)
chr4 (27-120)||(37443702-37443792)
chr4 (58-125)||(52254418-52254485)
chr4 (49-115)||(25869582-25869648)
chr4 (71-121)||(27965537-27965587)
chr4 (26-95)||(2622377-2622446)
chr4 (49-102)||(17618299-17618352)
chr4 (71-120)||(49582206-49582255)
chr4 (11-115)||(3743077-3743181)
chr4 (56-120)||(5795421-5795485)
chr4 (28-120)||(8325363-8325455)
chr4 (28-96)||(23377980-23378048)
chr4 (56-120)||(31759670-31759734)
chr4 (57-121)||(37720227-37720291)
chr4 (63-99)||(42644929-42644965)
chr4 (56-120)||(46295097-46295161)
chr4 (12-120)||(46545711-46545819)
chr4 (11-95)||(51954139-51954223)
[»] chr3 (49 HSPs)
chr3 (24-113)||(2667869-2667958)
chr3 (24-122)||(36720379-36720477)
chr3 (56-113)||(4844523-4844580)
chr3 (56-113)||(4870219-4870276)
chr3 (24-120)||(4222141-4222237)
chr3 (11-115)||(13808852-13808956)
chr3 (11-121)||(10499076-10499186)
chr3 (11-97)||(28531025-28531111)
chr3 (28-121)||(31520589-31520682)
chr3 (28-115)||(53412950-53413037)
chr3 (28-97)||(51903862-51903931)
chr3 (24-112)||(12761520-12761608)
chr3 (24-120)||(14186648-14186743)
chr3 (28-120)||(31788955-31789046)
chr3 (11-121)||(5499374-5499484)
chr3 (63-113)||(17554778-17554828)
chr3 (28-122)||(30311304-30311398)
chr3 (11-96)||(11090132-11090217)
chr3 (11-112)||(11612307-11612408)
chr3 (56-113)||(16991549-16991606)
chr3 (64-120)||(203090-203146)
chr3 (56-120)||(2597232-2597296)
chr3 (26-122)||(8051212-8051308)
chr3 (35-95)||(10445130-10445190)
chr3 (28-120)||(28703388-28703480)
chr3 (11-115)||(49494113-49494217)
chr3 (11-87)||(52769950-52770026)
chr3 (27-110)||(7673279-7673362)
chr3 (69-120)||(42430335-42430385)
chr3 (14-97)||(43417337-43417419)
chr3 (11-90)||(44743822-44743901)
chr3 (58-121)||(46518627-46518690)
chr3 (56-115)||(47454629-47454688)
chr3 (28-90)||(15048045-15048107)
chr3 (27-113)||(32638952-32639038)
chr3 (11-81)||(49397508-49397578)
chr3 (58-120)||(51766896-51766957)
chr3 (60-121)||(9557319-9557380)
chr3 (74-115)||(17034993-17035034)
chr3 (56-113)||(21960558-21960615)
chr3 (28-121)||(27093345-27093438)
chr3 (54-90)||(7975448-7975484)
chr3 (27-115)||(8390642-8390730)
chr3 (56-120)||(17108910-17108974)
chr3 (28-96)||(27259185-27259253)
chr3 (45-109)||(30194981-30195045)
chr3 (28-120)||(37788449-37788541)
chr3 (45-113)||(38550405-38550473)
chr3 (28-120)||(53863852-53863943)
[»] chr8 (32 HSPs)
chr8 (24-120)||(23361629-23361725)
chr8 (11-120)||(968362-968471)
chr8 (11-97)||(6536543-6536629)
chr8 (56-122)||(16852338-16852404)
chr8 (22-97)||(35690042-35690117)
chr8 (11-121)||(8484998-8485108)
chr8 (45-111)||(10287484-10287550)
chr8 (24-122)||(19703467-19703565)
chr8 (63-113)||(28636362-28636412)
chr8 (63-113)||(28644096-28644146)
chr8 (63-113)||(28653048-28653098)
chr8 (56-122)||(35641913-35641979)
chr8 (11-115)||(2203497-2203601)
chr8 (11-115)||(3624585-3624688)
chr8 (28-96)||(6569755-6569823)
chr8 (28-120)||(18540298-18540390)
chr8 (49-121)||(28783059-28783131)
chr8 (24-99)||(3305168-3305243)
chr8 (69-120)||(20994483-20994534)
chr8 (56-115)||(29858061-29858120)
chr8 (47-121)||(4830486-4830560)
chr8 (56-122)||(5264542-5264608)
chr8 (11-97)||(11492040-11492126)
chr8 (49-115)||(36205200-36205266)
chr8 (27-113)||(42740501-42740587)
chr8 (27-96)||(31087241-31087310)
chr8 (28-120)||(8059632-8059724)
chr8 (11-115)||(18546329-18546433)
chr8 (24-124)||(18897162-18897262)
chr8 (56-120)||(26688865-26688929)
chr8 (28-120)||(30483868-30483960)
chr8 (28-120)||(33017214-33017306)
[»] chr5 (28 HSPs)
chr5 (11-120)||(16773807-16773916)
chr5 (56-113)||(14495817-14495874)
chr5 (29-113)||(1410645-1410728)
chr5 (26-120)||(29075781-29075875)
chr5 (28-121)||(34984805-34984898)
chr5 (28-123)||(30883182-30883277)
chr5 (45-115)||(43241683-43241753)
chr5 (11-120)||(6844729-6844838)
chr5 (12-113)||(29692354-29692455)
chr5 (28-120)||(16457810-16457902)
chr5 (24-120)||(21589288-21589384)
chr5 (28-120)||(25627057-25627149)
chr5 (11-79)||(29210399-29210467)
chr5 (11-120)||(8278242-8278351)
chr5 (40-89)||(12883871-12883920)
chr5 (26-115)||(21086719-21086808)
chr5 (56-124)||(87435-87503)
chr5 (28-120)||(7918453-7918545)
chr5 (11-79)||(29173531-29173599)
chr5 (56-124)||(30109320-30109388)
chr5 (13-120)||(19949585-19949691)
chr5 (28-90)||(37258350-37258412)
chr5 (28-121)||(14285160-14285253)
chr5 (60-97)||(15641808-15641845)
chr5 (28-85)||(43442231-43442288)
chr5 (56-96)||(9842858-9842898)
chr5 (64-120)||(21549157-21549213)
chr5 (72-124)||(24652864-24652916)
[»] chr1 (46 HSPs)
chr1 (28-115)||(15786304-15786391)
chr1 (28-124)||(8904410-8904506)
chr1 (24-115)||(17745236-17745327)
chr1 (28-123)||(40257396-40257491)
chr1 (11-121)||(25297771-25297881)
chr1 (28-120)||(9165179-9165271)
chr1 (27-115)||(33700756-33700844)
chr1 (11-115)||(44126400-44126504)
chr1 (24-122)||(21547460-21547558)
chr1 (28-122)||(42412664-42412757)
chr1 (11-121)||(51814493-51814603)
chr1 (28-113)||(2069663-2069747)
chr1 (11-96)||(12587294-12587378)
chr1 (24-93)||(17439944-17440013)
chr1 (26-114)||(6948059-6948147)
chr1 (46-122)||(11687626-11687702)
chr1 (11-110)||(6650605-6650704)
chr1 (13-120)||(12662282-12662389)
chr1 (11-113)||(42983341-42983443)
chr1 (27-113)||(51703786-51703872)
chr1 (28-113)||(2074009-2074093)
chr1 (27-124)||(4566544-4566641)
chr1 (28-97)||(8177166-8177235)
chr1 (28-97)||(9643793-9643862)
chr1 (63-96)||(9964462-9964495)
chr1 (11-120)||(31794231-31794340)
chr1 (28-121)||(36371469-36371562)
chr1 (56-121)||(41508830-41508895)
chr1 (28-97)||(52336758-52336827)
chr1 (24-120)||(1094525-1094621)
chr1 (28-120)||(16893394-16893486)
chr1 (56-120)||(19528339-19528403)
chr1 (27-103)||(28411347-28411423)
chr1 (27-90)||(12370193-12370256)
chr1 (55-122)||(21268004-21268071)
chr1 (56-115)||(26232398-26232457)
chr1 (28-114)||(32916787-32916871)
chr1 (28-90)||(2799892-2799954)
chr1 (11-113)||(10526830-10526932)
chr1 (58-120)||(16169992-16170054)
chr1 (11-113)||(52116748-52116850)
chr1 (63-120)||(952511-952568)
chr1 (56-97)||(27223142-27223183)
chr1 (60-121)||(45235395-45235456)
chr1 (69-113)||(11068868-11068912)
chr1 (69-121)||(37046984-37047036)
[»] scaffold0258 (1 HSPs)
scaffold0258 (11-120)||(15290-15399)
[»] chr6 (21 HSPs)
chr6 (11-120)||(30127400-30127509)
chr6 (24-121)||(33549103-33549200)
chr6 (11-122)||(12234474-12234585)
chr6 (56-122)||(31623003-31623069)
chr6 (24-115)||(6758402-6758493)
chr6 (28-115)||(6776591-6776678)
chr6 (58-113)||(24641204-24641259)
chr6 (28-114)||(11423572-11423658)
chr6 (60-97)||(9433606-9433643)
chr6 (27-115)||(32613123-32613211)
chr6 (24-86)||(1992227-1992289)
chr6 (28-121)||(12188287-12188380)
chr6 (11-96)||(12633033-12633118)
chr6 (22-86)||(9626066-9626130)
chr6 (68-115)||(13441055-13441102)
chr6 (45-96)||(21943429-21943480)
chr6 (24-110)||(3715462-3715548)
chr6 (36-90)||(15951294-15951348)
chr6 (63-120)||(14557962-14558019)
chr6 (28-89)||(28363968-28364029)
chr6 (13-97)||(346554-346637)
[»] chr2 (29 HSPs)
chr2 (28-113)||(41202257-41202342)
chr2 (56-121)||(39714991-39715056)
chr2 (13-120)||(28846691-28846798)
chr2 (35-115)||(16918569-16918649)
chr2 (28-120)||(19244109-19244201)
chr2 (24-112)||(21213777-21213865)
chr2 (11-123)||(42602551-42602663)
chr2 (60-115)||(6760892-6760947)
chr2 (28-122)||(1729814-1729908)
chr2 (56-122)||(34041600-34041666)
chr2 (11-120)||(19016031-19016140)
chr2 (24-121)||(29197356-29197453)
chr2 (56-121)||(37480074-37480139)
chr2 (11-120)||(42327362-42327471)
chr2 (35-115)||(3001384-3001464)
chr2 (56-120)||(5147691-5147755)
chr2 (56-120)||(26545840-26545904)
chr2 (27-123)||(29503268-29503363)
chr2 (28-120)||(40416374-40416466)
chr2 (56-120)||(42860348-42860412)
chr2 (64-114)||(12994396-12994446)
chr2 (11-89)||(33582004-33582082)
chr2 (60-121)||(7799051-7799112)
chr2 (24-97)||(11251110-11251183)
chr2 (28-97)||(30410533-30410602)
chr2 (39-92)||(30907623-30907676)
chr2 (28-120)||(42922414-42922507)
chr2 (28-121)||(45026742-45026835)
chr2 (36-120)||(4438971-4439055)
[»] scaffold0299 (1 HSPs)
scaffold0299 (28-114)||(11534-11620)
[»] chr7 (45 HSPs)
chr7 (56-120)||(22760863-22760927)
chr7 (12-90)||(5934151-5934229)
chr7 (28-120)||(15137553-15137645)
chr7 (28-120)||(26459394-26459486)
chr7 (11-121)||(2446307-2446417)
chr7 (11-89)||(7721400-7721478)
chr7 (56-126)||(17041024-17041094)
chr7 (11-121)||(30579334-30579444)
chr7 (58-115)||(23595734-23595791)
chr7 (56-120)||(23301614-23301678)
chr7 (11-115)||(41519232-41519335)
chr7 (56-120)||(48771938-48772002)
chr7 (26-121)||(23552117-23552212)
chr7 (24-114)||(19553460-19553549)
chr7 (39-121)||(43215183-43215265)
chr7 (28-121)||(25655212-25655305)
chr7 (63-120)||(42836020-42836077)
chr7 (28-120)||(5273574-5273666)
chr7 (56-120)||(7801180-7801244)
chr7 (56-120)||(20335843-20335907)
chr7 (28-120)||(25590611-25590703)
chr7 (28-120)||(33869429-33869521)
chr7 (24-79)||(2882991-2883046)
chr7 (11-102)||(21558146-21558237)
chr7 (30-113)||(25956279-25956361)
chr7 (58-113)||(37085563-37085618)
chr7 (28-90)||(29785285-29785347)
chr7 (28-106)||(33222384-33222462)
chr7 (63-113)||(36803646-36803696)
chr7 (11-81)||(42711997-42712067)
chr7 (13-115)||(45976892-45976994)
chr7 (38-123)||(13106776-13106860)
chr7 (67-120)||(22932734-22932787)
chr7 (63-120)||(25021354-25021411)
chr7 (24-121)||(38374579-38374676)
chr7 (56-113)||(45709720-45709777)
chr7 (69-113)||(4161295-4161339)
chr7 (28-84)||(9183175-9183231)
chr7 (63-115)||(21854553-21854605)
chr7 (56-96)||(26703149-26703189)
chr7 (56-116)||(28236593-28236653)
chr7 (28-120)||(31835192-31835284)
chr7 (45-113)||(33362639-33362707)
chr7 (28-120)||(39631844-39631936)
chr7 (11-115)||(43663062-43663166)
[»] scaffold0118 (1 HSPs)
scaffold0118 (10-120)||(41599-41709)
[»] scaffold0032 (1 HSPs)
scaffold0032 (11-120)||(112282-112391)
[»] scaffold0002 (1 HSPs)
scaffold0002 (27-115)||(94954-95042)
[»] scaffold0074 (1 HSPs)
scaffold0074 (24-99)||(45739-45814)
[»] scaffold1367 (1 HSPs)
scaffold1367 (39-114)||(835-910)
[»] scaffold0194 (1 HSPs)
scaffold0194 (28-115)||(13030-13117)
[»] scaffold0065 (1 HSPs)
scaffold0065 (11-113)||(12196-12298)
[»] scaffold0291 (1 HSPs)
scaffold0291 (56-113)||(2482-2539)
[»] scaffold0044 (1 HSPs)
scaffold0044 (12-97)||(92970-93055)
[»] scaffold0591 (1 HSPs)
scaffold0591 (63-99)||(5646-5682)
[»] scaffold0021 (1 HSPs)
scaffold0021 (57-97)||(157000-157040)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 21660111 - 21660339
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    ||||||||| ||||||||||||||||| ||||| ||| |||| | |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  21660111 gctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacc 21660210  T
Q  111 caagtcggtttataatcttcgaatttcctctctacaatgcttagacccgctccgccgtatcaagannnnnnngggattcaaattattttgtaggatgact 210  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||        ||||||||||||||||||||||||||||    
T  21660211 caagttggtttataatcttcgaatttcctctctacaatgcttagacccgctccgccatatcaagttttttttgggattcaaattattttgtaggatgact 21660310  T
Q  211 tttgattgaccactgatgaccatggttct 239  Q
    ||| |||||||||||||||||||||||||    
T  21660311 ttttattgaccactgatgaccatggttct 21660339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 21668875 - 21669103
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    ||||||||| ||||||||||||||||| ||||| ||| |||| | |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  21668875 gctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacc 21668974  T
Q  111 caagtcggtttataatcttcgaatttcctctctacaatgcttagacccgctccgccgtatcaagannnnnnngggattcaaattattttgtaggatgact 210  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||        ||||||||||||||||||||||||||||    
T  21668975 caagttggtttataatcttcgaatttcctctctacaatgcttagacccgctccgccatatcaagttttttttgggattcaaattattttgtaggatgact 21669074  T
Q  211 tttgattgaccactgatgaccatggttct 239  Q
    ||| |||||||||||||||||||||||||    
T  21669075 ttttattgaccactgatgaccatggttct 21669103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 28635805 - 28635696
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | ||| |||||| ||||||||| ||| |||| ||||||||| |||| ||||||||||||||||||||||||| ||| |||||  |||||    
T  28635805 gctaaattagcccacccaaattggcaccagagagaatcgaacctaagacctccaggaggagcacactcccagatcccaagtcagtaccaccaggacaacc 28635706  T
Q  111 caagtcggtt 120  Q
    ||||| ||||    
T  28635705 caagtgggtt 28635696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 51948573 - 51948480
Alignment:
Q  27 taaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||||  |||| |||||||| | |||||||||||| | ||||||||| |||||||||||||||||||||||  |||||||||| ||||    
T  51948573 taaattgacactggagagaattgaacctgagacctcgaggaggggcacactcctagatcccaagtcaatactaccaggacaacccaagtgggtt 51948480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 37109335 - 37109427
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||||||| ||| |||| | |||||| ||||| |||||||||||||| ||||||| |||||| || || ||||||||||| ||||    
T  37109335 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 19680771 - 19680866
Alignment:
Q  27 taaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttta 122  Q
    ||||||| ||||||||| ||| |||| |||||||| |||||||||||||||||||  |||||||  ||||| || || |||| |||||| ||||||    
T  19680771 taaattggcaccagagagaatcgaacctaagaccttgaggaagagcacactcccaagtcccaagcgaataccactaggccaatccaagtgggttta 19680866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 7949421 - 7949507
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    |||||||||  | |||||||||||||||||||| ||| |||| | |||||| ||||| ||||||||||| || ||||||| ||||||    
T  7949421 gctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatac 7949507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 12793878 - 12793980
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | |||||||||| ||||||||| ||| |||| ||| || ||| |||||||||||||| ||||||| ||| |||||  || |||||||||    
T  12793878 gctaaattagcccacctaaattggcaccagagagaatcgaacttaatacttcgtggaagagcacactcacagatccgaagccaatatcactagaccaacc 12793977  T
Q  111 caa 113  Q
    |||    
T  12793978 caa 12793980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 13015536 - 13015450
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    |||||||||  | ||||||||||||||| |||| ||| |||||| |||| ||||||| |||||||||||||  ||||||| ||||||    
T  13015536 gctaaattaacccacctaaattgacacctgagagaatcgaacatgagacttcgaggaggagcacactcccaagtcccaagccaatac 13015450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 24827889 - 24827823
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttta 122  Q
    |||||||||||| |||| ||||||||| |||||||||||||| ||| |||||||| |||| ||||||    
T  24827889 agacctcgaggaggagcgcactcccaggtcccaagtcaataccaccggaccaaccaaagtgggttta 24827823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 14451713 - 14451821
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||| | || |||||||||||| |  | |||||||| |||||||| ||||| |||||||||| || |||||||||||| || |||  |||||||    
T  14451713 gctaaattatcccacttaaattgacaccgggaaaaattgaacctaagaccttgaggaggagcacactctcatatcccaagtcaa-accaccgaaccaacc 14451811  T
Q  111 caagtcggtt 120  Q
    ||||| ||||    
T  14451812 caagtgggtt 14451821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 39509179 - 39509070
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | |||||||||| |||  | || ||| |||| | |||||||||||| |||||||||||||||||||||| || ||| |  |||||||||    
T  39509179 gctaaattaacccacctaaattgccactggggagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccattaccatgagaccaacc 39509080  T
Q  111 caagtcggtt 120  Q
    ||||| ||||    
T  39509079 caagtgggtt 39509070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 9241037 - 9241101
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||| | ||||||||| |||||||||||| |||||| ||||| ||||||||||| ||||    
T  9241037 agacctcgagcaggagcacactaccagatcccaagccaataccaccaggccaacccaagtgggtt 9241101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 19238589 - 19238653
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||||| |||||||||||||  ||||||| |||||| ||||| ||||||||||| ||||    
T  19238589 agacctcgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaagtgggtt 19238653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 47044781 - 47044717
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||||| ||||| |||| |||||||||||||||||| ||||| |||| |||||| ||||    
T  47044781 agacctcgaggaggagcaaactctcagatcccaagtcaataccaccaggccaatccaagtgggtt 47044717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 51250547 - 51250599
Alignment:
Q  69 gagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||| |||||    
T  51250547 gagcacactcccagatcccaagccaataccaccaggccaacccaagtgggttt 51250599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 37274450 - 37274536
Alignment:
Q  35 caccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaa-tactaccagaccaacccaagtcggtt 120  Q
    ||||||||| ||| |||| |||||||| ||||| |||||||||||||| ||||||| ||| ||| || || ||||||||||| ||||    
T  37274450 caccagagagaatcgaacctaagaccttgaggaggagcacactcccaggtcccaagccaattacgactaggccaacccaagtgggtt 37274536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 38869860 - 38869791
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    |||||| ||||||||  ||| |||| | |||||| ||||| |||||||||||||||||||||| ||||||    
T  38869860 aaattggcaccagagggaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatac 38869791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 56236940 - 56236981
Alignment:
Q  69 gagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    ||||||||||||| ||||||||||||||| ||||||||||||    
T  56236940 gagcacactcccatatcccaagtcaataccaccagaccaacc 56236981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 8306577 - 8306485
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||| ||||| ||| |||| |||||| ||||||| |||||||||||||| || |||| | || | | ||||||||| ||||| ||||    
T  8306577 aaattgacactagagagaatcgaacttaagacttcgaggaggagcacactcccaggtctcaagccgatgccaacagaccaactcaagtgggtt 8306485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 13901851 - 13901747
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | ||||||||| |||  ||| | |||||||| | ||||||| |||| || ||||||||||| || |||| |||||| || |||||||||    
T  13901851 gctaaattaacccacctaaattaacattagatagaattgaacttgagacctcaaggaggaacacactcccaggtctcaagccaataccactagaccaacc 13901752  T
Q  111 caagt 115  Q
    |||||    
T  13901751 caagt 13901747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 43728470 - 43728402
Alignment:
Q  45 aattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||| | |||| | ||||| |||||||||||||||||  |||||||||| |||| ||||||||||    
T  43728470 aattgaacctgagactttgaggaggagcacactcccagatcataagtcaataccaccataccaacccaa 43728402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 55427212 - 55427276
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||| | ||||| |||||||| ||||||| |||||| ||||| ||||||||||| ||||    
T  55427212 agacctcgagcaggagcagactcccaggtcccaagccaataccaccaggccaacccaagtgggtt 55427276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 7292782 - 7292869
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    |||||| ||| ||||| ||| |||| | |||| | ||||| |||||||||||||| | ||||| |||||| || ||||||||||||||    
T  7292782 aaattggcactagagagaatcgaacctgagactttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagt 7292869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 12822019 - 12821968
Alignment:
Q  69 gagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    ||||||||||||||||||||||||||||  |||| |||||||| ||| ||||    
T  12822019 gagcacactcccagatcccaagtcaatatcaccaaaccaaccctagtgggtt 12821968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 37443792 - 37443702
Alignment:
Q  27 taaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    ||||||| ||||||||| ||| |||||| | ||||||||||   | |||||||||||||||||| |||||| || ||  |||||||||| ||||    
T  37443792 taaattggcaccagagataatcgaacatgaaacctcgagga---gtacactcccagatcccaagccaataccactaggtcaacccaagtgggtt 37443702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 52254418 - 52254485
Alignment:
Q  58 acctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtttataa 125  Q
    ||||| |||| |||||||||| || ||||||||||||||| | ||||||||| ||||| | |||||||    
T  52254418 acctcaaggaggagcacactctcatatcccaagtcaataccatcagaccaactcaagtggatttataa 52254485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 25869582 - 25869648
Alignment:
Q  49 gaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    ||||||||||| | ||||| |||||||||| |||||| ||||||||||| | || || |||||||||    
T  25869582 gaacataagactttgaggaggagcacactctcagatctcaagtcaataccatcaaactaacccaagt 25869648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 27965537 - 27965587
Alignment:
Q  71 gcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||||||||||||||||| |||||| || || ||||||||||| |||||    
T  27965537 gcacactcccagatcccaagccaataccactaggccaacccaagtgggttt 27965587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 2622377 - 2622446
Alignment:
Q  26 ctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaat 95  Q
    |||||||| ||||||||| ||| |||| | |||| | ||||| |||||||||||||| ||||||| ||||    
T  2622377 ctaaattggcaccagagagaatcgaacctgagacatggaggaggagcacactcccaggtcccaagccaat 2622446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 17618352 - 17618299
Alignment:
Q  49 gaacataagacctcgaggaagagcacactcccagatcccaagtcaatactacca 102  Q
    |||||| |||||||||||| |||||||||||||| || |||| |||||| ||||    
T  17618352 gaacatgagacctcgaggaggagcacactcccaggtctcaagccaataccacca 17618299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 49582255 - 49582206
Alignment:
Q  71 gcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||| |||||||||| ||||||  ||||||||||||||||| ||||    
T  49582255 gcacactctcagatcccaaatcaatatcaccagaccaacccaagtaggtt 49582206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 3743077 - 3743181
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    ||||||||| || || |||| || || |||||| ||| |||  ||||| || ||||| || |||||||  ||||||||||||||||  ||||||||||||    
T  3743077 gctaaattaatccacttaaactggcatcagagagaatcgaatctaagatcttgaggaggaacacactcttagatcccaagtcaatatcaccagaccaacc 3743176  T
Q  111 caagt 115  Q
     ||||    
T  3743177 gaagt 3743181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 5795421 - 5795485
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||| ||||| ||||| || | ||||||||| || ||||||||||||||||| ||||    
T  5795421 agaccttgaggaggagcatactccaaggtgccaagtcaacaccaccagaccaacccaagtgggtt 5795485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 8325363 - 8325455
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    ||||||||||| | || ||| |||| |||||||| ||||| ||||||||||| || || |||| ||| || ||| | ||||||||||| ||||    
T  8325363 aaattgacaccggggagaatcgaacctaagaccttgaggatgagcacactccaaggtctcaagccaacaccaccggcccaacccaagtgggtt 8325455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 23378048 - 23377980
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaata 96  Q
    |||||| ||| ||||| ||| |||| | |||||| ||||| |||||||||||||| ||||||| |||||    
T  23378048 aaattggcactagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaata 23377980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 31759670 - 31759734
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||| |||||||||||||  ||||||| |||||| || ||| |||||||||| ||||    
T  31759670 agaccttgaggaggagcacactcccaagtcccaagccaataccactagatcaacccaagtgggtt 31759734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 37720227 - 37720291
Alignment:
Q  57 gacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    ||||| ||||| | |||||||||||| ||||||| |||||  ||||| ||||||||||| |||||    
T  37720227 gaccttgaggaggggcacactcccaggtcccaagccaataacaccaggccaacccaagtgggttt 37720291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 42644929 - 42644965
Alignment:
Q  63 gaggaagagcacactcccagatcccaagtcaatacta 99  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  42644929 gaggaagaacacactctcagatcccaagtcaatacta 42644965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 46295161 - 46295097
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||| ||||||||||| |  ||||||| ||| ||||||||||||||| |||| ||||    
T  46295161 agaccttgaggaggagcacactccaatgtcccaagccaacactaccagaccaacctaagtgggtt 46295097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 46545819 - 46545711
Alignment:
Q  12 ctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaaccc 111  Q
    |||||||| || | ||||||||||| |||||| ||| |||  | ||| || ||||| |||||||||| ||| || |||| |||||| || || |||||||    
T  46545819 ctaaattagtccatctaaattgacatcagagaaaatcgaatctgagatcttgaggaggagcacactctcaggtctcaagccaataccactaggccaaccc 46545720  T
Q  112 aagtcggtt 120  Q
    |||| ||||    
T  46545719 aagtgggtt 46545711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 51954223 - 51954139
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaat 95  Q
    |||||||||  | ||| ||||||||||| |||| |||  ||| | |||||||||||| ||||| |||||||  ||||||||||||    
T  51954223 gctaaattagcccacccaaattgacaccggagataatcaaacctgagacctcgaggaggagcatactcccaagtcccaagtcaat 51954139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 2667958 - 2667869
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||||||||| ||||| ||| |||| | ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||    
T  2667958 acctaaattgacactagagataatcgaacctgagacctcgaggaagagcacactcccagatcccaagccaataccaccaggccaacccaa 2667869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 36720477 - 36720379
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttta 122  Q
    |||||||||||||| ||||| ||| |||| | | |||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||||| ||||||    
T  36720477 acctaaattgacactagagagaatcgaacctgaaacctcgaggaggagcacactcccatatcccaagccaataccaccagaccaacccaagtgggttta 36720379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 4844523 - 4844580
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  4844523 agacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaa 4844580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 4870219 - 4870276
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  4870219 agacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaa 4870276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 4222237 - 4222141
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||||||||||||| ||| |||| |||||| | ||||| |||||||||||||||||||||| |||||| || |  ||||||||||| ||||    
T  4222237 acctaaattgacaccagagagaatcgaacctaagactttgaggaggagcacactcccagatcccaagccaataccactaagccaacccaagtgggtt 4222141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 13808852 - 13808956
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    ||||||||| || | | |||||||||  ||||| |||||||| | |||||| ||||| ||||||||| ||||||||||||||||||  ||||||||||||    
T  13808852 gctaaattaatccatccaaattgacattagagagaattgaacctgagacctagaggaggagcacactgccagatcccaagtcaataagaccagaccaacc 13808951  T
Q  111 caagt 115  Q
    |||||    
T  13808952 caagt 13808956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 10499076 - 10499186
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | ||| ||||||||| | |||| ||| |||| | ||||||| |||||||||| |||||||||||||||| |||||| ||||| ||||||    
T  10499076 gctaaattagcccacccaaattgacatcggagagaatcgaacctgagacctcaaggaagagcagactcccagatcccaagccaataccaccaggccaacc 10499175  T
Q  111 caagtcggttt 121  Q
    ||||| |||||    
T  10499176 caagtgggttt 10499186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 28531025 - 28531111
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    |||||||||  | ||| |||||||||||||||| |||||| | |||||||||||||| ||||| |||||||||||||||| ||||||    
T  28531025 gctaaattagcccacccaaattgacaccagagagaattgagcctaagacctcgaggaggagcatactcccagatcccaagccaatac 28531111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 31520589 - 31520682
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    ||||||||||  |||| |||  ||| |||||||||||||| |||||||||||||||||||||| |||| | ||||| ||||||||||| |||||    
T  31520589 aaattgacactggagagaatcaaacctaagacctcgaggaggagcacactcccagatcccaagccaatgccaccaggccaacccaagtgggttt 31520682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 53413037 - 53412950
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    |||||| ||||||||| |||||||| | |||||| ||||| |||||||||||||| |  |||| |||||| || ||||||||||||||    
T  53413037 aaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcccaggttacaagccaataccactagaccaacccaagt 53412950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 51903862 - 51903931
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    ||||||||||| |||| ||| |||| | ||||| |||||| |||||||||||||||||||||| ||||||    
T  51903862 aaattgacaccggagagaatcgaacctgagaccacgaggaggagcacactcccagatcccaagccaatac 51903931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 12761608 - 12761520
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaaccca 112  Q
    |||||||||| |||| | || ||| |||| | ||| ||| |||| || ||||||||||| |||||||||||||| ||||||||||||||    
T  12761608 acctaaattggcaccggggaaaatcgaacctgagagctcaaggaggaacacactcccaggtcccaagtcaataccaccagaccaaccca 12761520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 14186743 - 14186648
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    ||||||||||||||| |||| ||| |||| | |||||| ||||| ||||||||| |||| ||||||| |||||| || || ||||||||||| ||||    
T  14186743 acctaaattgacaccggagagaatcgaacctgagaccttgaggaggagcacact-ccaggtcccaagacaataccactaggccaacccaagtgggtt 14186648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 31788955 - 31789046
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||| ||||| |||  ||| ||| |||||||||| |||||||||||||||||||||| |||||  || || ||||||||||| ||||    
T  31788955 aaattgacac-agagataatcaaacctaaaacctcgaggaggagcacactcccagatcccaagccaataacactaggccaacccaagtgggtt 31789046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 5499374 - 5499484
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    ||||||||| ||||   |||||| |||| | || ||| |||| | ||||||  |||| |||||||||| |||||| ||||||||||| ||||| ||||||    
T  5499374 gctaaattagtctattgaaattggcaccggggagaatagaaccttagaccttaaggaggagcacactctcagatctcaagtcaataccaccaggccaacc 5499473  T
Q  111 caagtcggttt 121  Q
    ||||| |||||    
T  5499474 caagtgggttt 5499484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 17554828 - 17554778
Alignment:
Q  63 gaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||||||||||||||| ||||||| |||||| |||| ||||||||||    
T  17554828 gaggaagagcacactcccaggtcccaagccaataccaccaaaccaacccaa 17554778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 30311398 - 30311304
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttta 122  Q
    |||||| ||||| ||| ||| |||| | |||||| ||||| |||||||||||||||||||||| | |||| || || |||||||| || ||||||    
T  30311398 aaattggcaccaaagagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagcctataccactaggccaacccaggtgggttta 30311304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 11090132 - 11090217
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaata 96  Q
    |||||||||  |||| |||||||||||  || | ||| |||  |||||||||||||| ||||||| |||||||||||||| |||||    
T  11090132 gctaaattaacctacttaaattgacactcgaaagaatcgaaactaagacctcgaggaggagcacattcccagatcccaagccaata 11090217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 11612408 - 11612307
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    ||||||||| || |||||||||| |||| | ||  || |||| | ||||||  |||| |||||||||||||| |||||||| ||||| ||||| ||||||    
T  11612408 gctaaattagtcgacctaaattggcaccggggagcatcgaacctgagaccttaaggaggagcacactcccagctcccaagtgaataccaccaggccaacc 11612309  T
Q  111 ca 112  Q
    ||    
T  11612308 ca 11612307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 16991606 - 16991549
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    ||||||| | |||||| |||||||||||||||||| |||||| ||||| |||||||||    
T  16991606 agacctcaaagaagagtacactcccagatcccaagccaataccaccaggccaacccaa 16991549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 203146 - 203090
Alignment:
Q  64 aggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    ||||| ||||||||||| |||||||||||||||| || || ||||||||||| ||||    
T  203146 aggaaaagcacactccctgatcccaagtcaataccactaggccaacccaagtgggtt 203090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 2597232 - 2597296
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    ||||||| |||| ||||||||||| | |||| ||| |||||| ||||||||||||||||| ||||    
T  2597232 agacctcaaggaggagcacactcctaaatccgaagccaataccaccagaccaacccaagtgggtt 2597296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 8051308 - 8051212
Alignment:
Q  26 ctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttta 122  Q
    |||||||| |||| |||  ||| |||| | ||||||||||||  |||| ||| |||| ||||||| |||||| ||||| ||||||||||| ||||||    
T  8051308 ctaaattggcaccggagggaatcgaacttgagacctcgaggagaagcatactgccaggtcccaagccaataccaccaggccaacccaagtgggttta 8051212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 10445130 - 10445190
Alignment:
Q  35 caccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaat 95  Q
    ||||||||| ||| |||| | |||||||||||| |||||||||||||| ||||||| ||||    
T  10445130 caccagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaat 10445190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 28703388 - 28703480
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||||||| ||| |||| | |||||| || || ||||||||||||||||||||||  ||||  ||  ||||||||||||| ||||    
T  28703388 aaattggcaccagagagaatcgaacctgagaccttgaagaggagcacactcccagatcccaagctaatatcactggaccaacccaagtgggtt 28703480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 49494113 - 49494217
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    ||||||||| |||| ||| |||| || ||| || |||  ||| | |||||||||||||||||||||||||| ||  ||||||||||| || || | ||||    
T  49494113 gctaaattaatctatctagattggcatcagggagaatcaaacctgagacctcgaggaagagcacactcccaaatttcaagtcaataccactaggctaacc 49494212  T
Q  111 caagt 115  Q
    |||||    
T  49494213 caagt 49494217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 52769950 - 52770026
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatccc 87  Q
    |||||||||  | |||||||||||||| | ||| ||| |||| | ||||||| |||| |||||||||||||||||||    
T  52769950 gctaaattagcccacctaaattgacactaaagagaatcgaacctgagacctcaaggaggagcacactcccagatccc 52770026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 7673362 - 7673279
Alignment:
Q  27 taaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    ||||||||||  |||||  || |||| |||||||| ||| |  |||||||| ||| ||||||||||||||| ||||||||||||    
T  7673362 taaattgacattagagagtatcgaacctaagaccttgagaataagcacacttccaaatcccaagtcaataccaccagaccaacc 7673279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 42430385 - 42430335
Alignment:
Q  69 gagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||    
T  42430385 gagcacactccaagatcccaagtcaataccaccag-ccaacccaagtgggtt 42430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 43417419 - 43417337
Alignment:
Q  14 aaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    |||||| || ||||||||||||||| ||   |||||||||| |||||| ||||| || |||||||| |||||||||| ||||||    
T  43417419 aaattaatccacctaaattgacaccgga-tgaattgaacatgagaccttgaggatgatcacactccaagatcccaagacaatac 43417337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 44743822 - 44743901
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaag 90  Q
    |||||||||  | ||| |||||| |||  |||| ||| |||| | |||||||||||| ||||||||||||||||||||||    
T  44743822 gctaaattaacccacccaaattggcactggagataatcgaacctgagacctcgaggaggagcacactcccagatcccaag 44743901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 46518690 - 46518627
Alignment:
Q  58 acctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||| ||||| |||||||||||||||||||||| |||||| || |  ||||||||||| |||||    
T  46518690 accttgaggaggagcacactcccagatcccaagccaataccactatgccaacccaagtgggttt 46518627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 47454629 - 47454688
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    |||||||||||| ||||||||||| ||||| |||| |||||| || ||| ||||||||||    
T  47454629 agacctcgaggaggagcacactccaagatctcaagccaataccactagaacaacccaagt 47454688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 15048045 - 15048107
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaag 90  Q
    |||||| ||||||||| ||| |||| | |||||| ||||| ||||||| ||||||||||||||    
T  15048045 aaattggcaccagagataatcgaacctgagaccttgaggaggagcacattcccagatcccaag 15048107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 32639038 - 32638952
Alignment:
Q  27 taaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||||||  |||| ||| |||| | ||||||||| || || ||||||||||| | ||||| |||||| |||||| ||||||||    
T  32639038 taaattgacactggagaaaatcgaacctgagacctcgaagatgaacacactcccagtttccaagccaataccaccagaacaacccaa 32638952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 49397508 - 49397578
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactccca 81  Q
    ||||||||| || ||||||||||||| |  ||| ||| |||||| ||||||||||||  ||||||||||||    
T  49397508 gctaaattagtccacctaaattgacatctaagataatcgaacatgagacctcgaggagaagcacactccca 49397578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 51766957 - 51766896
Alignment:
Q  58 acctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||| |||||||||||||||||||||| |||||||||||| | | ||| ||||||||| ||||    
T  51766957 accttgaggaagagcacactcccagat-ccaagtcaataccatcggactaacccaagtgggtt 51766896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 9557380 - 9557319
Alignment:
Q  60 ctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||||| |||||||||| ||||||||||| |||||||| ||| ||| | ||||| |||||    
T  9557380 ctcgaggaggagcacactctcagatcccaagccaatactatcaggccagctcaagtgggttt 9557319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 17035034 - 17034993
Alignment:
Q  74 cactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    ||||| |||||||||||||||||| |||||| ||||||||||    
T  17035034 cactctcagatcccaagtcaataccaccagagcaacccaagt 17034993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 21960615 - 21960558
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||||||| |||||||||| ||| ||||||| |||||| |||||  ||||||||    
T  21960615 agacctcgaggaggagcacactctcaggtcccaagccaataccaccagcgcaacccaa 21960558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 27093345 - 27093438
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||| ||||||||| |||  ||| | |||||| ||||| |||||||||||||  | ||||| |||||| || || ||||||||||| |||||    
T  27093345 aaattggcaccagagagaatcaaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggttt 27093438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 7975484 - 7975448
Alignment:
Q  54 taagacctcgaggaagagcacactcccagatcccaag 90  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  7975484 taagaccttgaggaggagcacactcccagatcccaag 7975448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 8390730 - 8390642
Alignment:
Q  27 taaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    ||||||||||| ||| | ||| |||  |||||||| ||||||||||||||| |||  || |||| |||||| || ||||||| ||||||    
T  8390730 taaattgacactagaaagaatcgaatctaagaccttgaggaagagcacacttccaagtctcaaggcaataccactagaccaatccaagt 8390642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 17108910 - 17108974
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||| ||||||||||||| ||| | ||||||||| |||| || ||||||||| ||||    
T  17108910 agaccttgaggaggagcacactcccacatctccagtcaataccaccaaactaacccaagtgggtt 17108974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 27259253 - 27259185
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaata 96  Q
    ||||||||| |||||| |||  ||| | | |||||||||| |||||||||||||| ||||||| |||||    
T  27259253 aaattgacatcagagagaatcaaacctgaaacctcgaggaggagcacactcccaggtcccaagccaata 27259185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 30195045 - 30194981
Alignment:
Q  45 aattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaac 109  Q
    |||||||  |||||||||||||| |||||||||||||  ||| ||  |||||| |||||||||||    
T  30195045 aattgaatctaagacctcgaggatgagcacactcccaagtcctaaaccaataccaccagaccaac 30194981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 37788449 - 37788541
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||| ||||| ||| |||| | |||||| ||||| ||||||||||| || | |||||||||||| ||  | ||||||||||| ||||    
T  37788449 aaattggcactagagagaatcgaacctgagaccttgaggaggagcacactcctaggttccaagtcaataccactgggccaacccaagtgggtt 37788541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 38550405 - 38550473
Alignment:
Q  45 aattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||| | ||||||| |||| ||||||||||||| | || |||||||||| | ||| |||||||||    
T  38550405 aattgaacctcagacctcaaggaggagcacactcccaaaccctaagtcaataccaacaggccaacccaa 38550473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 53863852 - 53863943
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||||||| |||||||| |||||||| ||| | ||||||||||| || ||||||| ||| |  |||||  |||||||||| ||||    
T  53863852 aaattggcaccagagagaattgaacctaagaccttgag-aggagcacactccaaggtcccaagccaacatcaccaggacaacccaagtgggtt 53863943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 23361629 - 23361725
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||||||||||||| |||||||| | |||||| ||||| ||||||||||||| ||||||||||||||| |||||  |||||||||| ||||    
T  23361629 acctaaattgacaccagagagaattgaacctgagaccttgaggaggagcacactcccatatcccaagtcaataccaccaggtcaacccaagtgggtt 23361725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 968471 - 968362
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | |||||||||| || | |||| ||| |||| | |||||||||||| |||||||||||||| ||||||| |||||| ||||| |||||     
T  968471 gctaaattagcccacctaaattggcatcggagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaact 968372  T
Q  111 caagtcggtt 120  Q
    ||||| ||||    
T  968371 caagtgggtt 968362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 6536629 - 6536543
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    |||||||||  | |||||||||| ||||||||| |||||||| | |||||| ||||| ||||||||||| || ||||||| ||||||    
T  6536629 gctaaattaacccacctaaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaatac 6536543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 16852404 - 16852338
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttta 122  Q
    |||||||||||| |||||||||||||| ||||||| |||||| || || ||||||||||| ||||||    
T  16852404 agacctcgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttta 16852338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 35690042 - 35690117
Alignment:
Q  22 ctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    |||| ||||||||||||||||| ||| |||| | |||||| ||||| ||||| || ||||||||||||| ||||||    
T  35690042 ctacttaaattgacaccagagagaatcgaacctgagaccttgaggaggagcaaacacccagatcccaagccaatac 35690117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 8485108 - 8484998
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | |||||||||| |||| |||| ||| ||| || ||||||| | || |||||||||| ||| |||||||  ||||| ||||| ||||||    
T  8485108 gctaaattagcccacctaaattggcaccggagagaatcgaaaatgagacctcaaagaggagcacactcacaggtcccaagcaaataccaccaggccaacc 8485009  T
Q  111 caagtcggttt 121  Q
    ||||| |||||    
T  8485008 caagtgggttt 8484998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 10287550 - 10287484
Alignment:
Q  45 aattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaaccc 111  Q
    |||||||| | ||||||||||||  |||||||| ||||||  |||| ||||||||||||||||||||    
T  10287550 aattgaacctgagacctcgaggagaagcacacttccagatttcaagccaatactaccagaccaaccc 10287484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 19703467 - 19703565
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttta 122  Q
    |||| ||||||||| || || ||| |||| | |||||| ||||| |||||||||| ||| ||||||| |||||| || || ||||||||||| ||||||    
T  19703467 accttaattgacactagggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaacccaagtgggttta 19703565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 28636362 - 28636412
Alignment:
Q  63 gaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    ||||||||| ||||||||||||||||||||||||||| |||  ||||||||    
T  28636362 gaggaagagtacactcccagatcccaagtcaatactatcaggtcaacccaa 28636412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 28644096 - 28644146
Alignment:
Q  63 gaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    ||||||||| ||||||||||||||||||||||||||| |||  ||||||||    
T  28644096 gaggaagagtacactcccagatcccaagtcaatactatcaggtcaacccaa 28644146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 28653048 - 28653098
Alignment:
Q  63 gaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    ||||||||| ||||||||||||||||||||||||||| |||  ||||||||    
T  28653048 gaggaagagtacactcccagatcccaagtcaatactatcaggtcaacccaa 28653098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 35641913 - 35641979
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttta 122  Q
    |||| ||||||| ||||||||||||| ||| |||| | |||| ||||||||||||||||| ||||||    
T  35641913 agacatcgaggaggagcacactcccaaatctcaagccgataccaccagaccaacccaagtgggttta 35641979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 2203601 - 2203497
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | ||| |||||| |||| | || |||||| | | |||||| ||||| |||||||||||||| ||||||| |||||| || || ||||||    
T  2203601 gctaaattagcccacccaaattggcaccggggagaattgaccctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacc 2203502  T
Q  111 caagt 115  Q
    |||||    
T  2203501 caagt 2203497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 3624688 - 3624585
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | |||||||||||| || |||| ||| |||| | |||||| || || |||||||||||||| ||||||| |||||| || || ||||||    
T  3624688 gctaaattagcccacctaaattgac-ccggagagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaataccactaggccaacc 3624590  T
Q  111 caagt 115  Q
    |||||    
T  3624589 caagt 3624585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 6569755 - 6569823
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaata 96  Q
    |||||||||||| ||| ||| |||||| | ||||  |||| |||||||||||||||||||||| |||||    
T  6569755 aaattgacaccaaagagaatcgaacatgaaacctaaaggaggagcacactcccagatcccaagccaata 6569823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 18540390 - 18540298
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||||||| ||| |||| | |||||| |||||  || |||||||||| ||||||| |||||| || || ||||||||||| ||||    
T  18540390 aaattggcaccagagagaatcgaacctgagaccttgaggagaagtacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 18540298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 28783131 - 28783059
Alignment:
Q  49 gaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||| |||||| ||||| |||||||||||||| || |||| |||||| ||||  ||||||||||| |||||    
T  28783131 gaacatgagaccttgaggaggagcacactcccaggtctcaagccaataccaccaagccaacccaagtgggttt 28783059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 3305168 - 3305243
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatacta 99  Q
    |||||||||| ||||||||| ||| |||  | |||||| ||||| |||||| ||||||||||||||  ||||||||    
T  3305168 acctaaattggcaccagagataatcgaatttgagaccttgaggaggagcacgctcccagatcccaaaccaatacta 3305243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 20994483 - 20994534
Alignment:
Q  69 gagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||||||| |||||||||||||| || || ||||||||||| ||||    
T  20994483 gagcacactcccaggtcccaagtcaataccactaggccaacccaagtgggtt 20994534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 29858061 - 29858120
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    |||||||||||| |||||||||||| | ||||||| |||||| ||||| |||| ||||||    
T  29858061 agacctcgaggaggagcacactccctggtcccaagccaataccaccaggccaatccaagt 29858120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 4830560 - 4830486
Alignment:
Q  47 ttgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||| | |||||||||||| || ||||||| ||||||||||   ||||| ||||| ||||||||||| |||||    
T  4830560 ttgaacctgagacctcgaggaggaacacactctcagatcccaaacaaataccaccaggccaacccaagtgggttt 4830486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 5264608 - 5264542
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttta 122  Q
    |||||||||||| ||||||| |||||| | ||||| |||||| || || ||||||||||| ||||||    
T  5264608 agacctcgaggaggagcacattcccaggttccaagccaataccactaggccaacccaagtgggttta 5264542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 11492040 - 11492126
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    |||||||||  | ||| ||||||||||   ||| ||| |||| |||||||||||| | ||||||||||||||||| |||| ||||||    
T  11492040 gctaaattagcccacccaaattgacactgaagagaatcgaacctaagacctcgagaaggagcacactcccagatctcaagccaatac 11492126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 36205266 - 36205200
Alignment:
Q  49 gaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    |||||| |||||| ||||| ||||||||||||||||| |||  |||||  | |||||||||||||||    
T  36205266 gaacatgagaccttgaggaggagcacactcccagatctcaaaccaataacatcagaccaacccaagt 36205200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 42740587 - 42740501
Alignment:
Q  27 taaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    ||||||||||||||||| |||||||| | |||||| ||||| || || ||||||| ||  ||||  ||||| || ||||||||||||    
T  42740587 taaattgacaccagagagaattgaacctgagaccttgaggatgatcaaactcccaaatttcaagctaataccactagaccaacccaa 42740501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 31087241 - 31087310
Alignment:
Q  27 taaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaata 96  Q
    |||||||||||| |||| ||| |||| | |||||||||||| | | | |||||||||||||||| |||||    
T  31087241 taaattgacaccggagataatcgaacctgagacctcgaggagggggatactcccagatcccaagccaata 31087310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 8059724 - 8059632
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    ||||||||| ||| || ||| |||| | |||||| ||||| || ||||||| || || |||||||||||| | ||| ||||||||||| ||||    
T  8059724 aaattgacatcagggagaatggaacctgagaccttgaggaggatcacactctcacatgccaagtcaataccatcaggccaacccaagtgggtt 8059632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 18546329 - 18546433
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    ||||||||||   |||||||||||| || | || ||| |||| | |||||||||||| |||||  ||| ||| |||||| ||||||| || |||||||||    
T  18546329 gctaaattatctcacctaaattgacgccggtgagaatcgaacctgagacctcgaggaggagcatgctctcaggtcccaaatcaataccactagaccaacc 18546428  T
Q  111 caagt 115  Q
     ||||    
T  18546429 taagt 18546433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 18897262 - 18897162
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtttat 123  Q
    |||||||||| ||||||  | ||| |||||| |||||| ||||| ||||||||||  || ||||||  ||| || || || ||||||||||| |||||||    
T  18897262 acctaaattggcaccaggaagaatcgaacatgagaccttgaggaggagcacactctaaggtcccaaaccaacaccactaggccaacccaagtgggtttat 18897163  T
Q  124 a 124  Q
    |    
T  18897162 a 18897162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 26688929 - 26688865
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||| ||||||||||| || ||||||| ||| || ||||| ||||||||||| ||||    
T  26688929 agaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 26688865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 30483868 - 30483960
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||| ||||| |||||||| | ||||   ||||| ||||||||||||| |||||||| |||||| ||  | ||||||||||| ||||    
T  30483868 aaattggcacaagagagaattgaacctgagactctgaggaggagcacactcccatatcccaagccaataccactgggccaacccaagtgggtt 30483960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 33017306 - 33017214
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||||||| ||| |||| | |||||| ||||| ||||||||| |||| | ||||| |||||  || || ||||||||||| ||||    
T  33017306 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacacttccaggttccaagccaatatgacaaggccaacccaagtgggtt 33017214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 16773916 - 16773807
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | |||||||||| || |||||| ||| |||| | |||||||||||| |||||||||||||| |||||||||||||| |||||||||||     
T  16773916 gctaaattagcccacctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaact 16773817  T
Q  111 caagtcggtt 120  Q
    ||||| ||||    
T  16773816 caagtgggtt 16773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 14495817 - 14495874
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  14495817 agacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaa 14495874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 1410645 - 1410728
Alignment:
Q  29 aattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    ||||||||||| ||| ||| |||| | |||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||    
T  1410645 aattgacaccacagagaatcgaac-tgagacctcgaggaggagcacactcccatatcccaagtcaataccaccagaccaacccaa 1410728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 29075875 - 29075781
Alignment:
Q  26 ctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||| ||||||||| ||| |||||| ||| |||||||| |||||||||||||||||||||| |||||| || || | ||||||||| ||||    
T  29075875 ctaaattggcaccagagagaatcgaacatgagatctcgaggaggagcacactcccagatcccaagccaataccactaggcaaacccaagtgggtt 29075781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 34984898 - 34984805
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||| ||||||||| ||| |||| |||||||| ||||| |||||||||||||| | ||||| |||||| || |||||||||||||| |||||    
T  34984898 aaattggcaccagagagaatcgaacctaagaccttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgggttt 34984805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 30883182 - 30883277
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtttat 123  Q
    ||||||||||  | || |||||||| | |||||| ||||| |||||||||||||| ||||||| |||||| || |||||||||||||| |||||||    
T  30883182 aaattgacactggtgagaattgaacttgagaccttgaggaggagcacactcccaggtcccaagccaataccactagaccaacccaagtgggtttat 30883277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 43241683 - 43241753
Alignment:
Q  45 aattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    |||||||| | ||||||| |||||| ||||||||| ||||||||||||||||| || ||||||||||||||    
T  43241683 aattgaacctgagacctcaaggaagggcacactccaagatcccaagtcaataccactagaccaacccaagt 43241753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 6844838 - 6844729
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||| || || |||||||||| ||| ||||| ||| |||| | |||||||||||| || |||||||||| || |||||||||||| ||| | ||||||    
T  6844838 gctaaactaatccacctaaattggcacgagagataatcgaaccttagacctcgaggaggaacacactcccaaattccaagtcaataccacctggccaacc 6844739  T
Q  111 caagtcggtt 120  Q
    ||||| ||||    
T  6844738 caagtgggtt 6844729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 29692354 - 29692455
Alignment:
Q  12 ctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaaccc 111  Q
    |||||||| || ||| |||||| || | |||| |||| ||| | |||| | ||||| |||||||||||||||||||||  |||||| |||||||||||||    
T  29692354 ctaaattagtccacccaaattggcatcggagagaattaaacctgagactttgaggaggagcacactcccagatcccaatccaataccaccagaccaaccc 29692453  T
Q  112 aa 113  Q
    ||    
T  29692454 aa 29692455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 16457902 - 16457810
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| |||| | || |||||||||| |||||| ||||| ||||||||||| || ||||||| |||||| ||||| |||||| |||| ||||    
T  16457902 aaattggcaccggggagaattgaacatgagaccttgaggaggagcacactccaaggtcccaagccaataccaccaggccaacctaagtgggtt 16457810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 21589384 - 21589288
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||| ||||||||  ||| |||| | |||| |||||||  |||| |||||||| ||||||| |||||| ||||| ||||||||||| ||||    
T  21589384 acctaaattggcaccagagggaatcgaacctgagacatcgaggagtagcagactcccaggtcccaagccaataccaccaggccaacccaagtgggtt 21589288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 25627149 - 25627057
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||||||||| ||| |||| | |||||| ||||| |||||||||||||  | ||||| |||||| || || ||||||||||| ||||    
T  25627149 aaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggtt 25627057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 29210467 - 29210399
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcc 79  Q
    ||||||||| || ||||||||||| |||||||| |||||||| | | |||||||||| |||||||||||    
T  29210467 gctaaattagtccacctaaattgataccagagagaattgaacttgaaacctcgaggaggagcacactcc 29210399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 8278242 - 8278351
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | |||||||| | |||| |||| |||  ||| | ||| |||||||| |||||||||||||  ||||||| |||||| | ||||||||||    
T  8278242 gctaaattagcccacctaaatcggcaccggagataatcaaacttgagatctcgaggaggagcacactcccaagtcccaagccaataccatcagaccaacc 8278341  T
Q  111 caagtcggtt 120  Q
    ||||| ||||    
T  8278342 caagtgggtt 8278351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 12883920 - 12883871
Alignment:
Q  40 gagacaattgaacataagacctcgaggaagagcacactcccagatcccaa 89  Q
    |||| |||||||||| ||||||| |||| |||||||||||||||||||||    
T  12883920 gagagaattgaacatgagacctcaaggaggagcacactcccagatcccaa 12883871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 21086808 - 21086719
Alignment:
Q  26 ctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    |||||||||||||||||| ||| |||  | ||| || ||||| ||||||||| |||||||| || ||||||| | ||||||||| |||||    
T  21086808 ctaaattgacaccagagataatcgaatctgagatcttgaggaggagcacactgccagatcctaaatcaataccatcagaccaactcaagt 21086719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 87435 - 87503
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtttata 124  Q
    |||||| ||||| |||||||||||||||| ||||| |||||| || || |||||| |||| ||||||||    
T  87435 agaccttgaggaggagcacactcccagattccaaggcaataccactaggccaaccgaagtgggtttata 87503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 7918453 - 7918545
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||||||| ||| |||| |||||||| ||||| |||  ||||||||| | ||||| |||||| || || ||||||||||| ||||    
T  7918453 aaattggcaccagagagaatcgaacctaagaccttgaggaggagtgcactcccaggttccaagccaataccactaggccaacccaagtgggtt 7918545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 29173599 - 29173531
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcc 79  Q
    |||||||||  | |||||||||||||||||||| ||| |||| | | |||||||||| |||||||||||    
T  29173599 gctaaattagcccacctaaattgacaccagagataatcgaacctgaaacctcgaggaggagcacactcc 29173531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 30109320 - 30109388
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtttata 124  Q
    ||||||| |||| |||||||||||||| || |||| |||||| ||||  ||||||||||| ||||||||    
T  30109320 agacctcaaggaggagcacactcccaggtcacaagccaataccaccaagccaacccaagtgggtttata 30109388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 19949585 - 19949691
Alignment:
Q  13 taaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaaccca 112  Q
    ||||||| |||| | ||||||||||| | || |||||||| | ||| |||||||| ||||||||| | ||||| ||||||||||| ||||   |||||||    
T  19949585 taaattagtctatccaaattgacaccggtgaaaattgaacctgagagctcgaggaggagcacact-ctagatctcaagtcaataccaccaagtcaaccca 19949683  T
Q  113 agtcggtt 120  Q
    ||| ||||    
T  19949684 agtaggtt 19949691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 37258350 - 37258412
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaag 90  Q
    |||||||||||||||| ||| |||| | | |||| ||||| ||||||||||| ||||||||||    
T  37258350 aaattgacaccagagagaatcgaacctgaaaccttgaggaggagcacactcctagatcccaag 37258412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 14285253 - 14285160
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||| ||||||||| ||| |||| | |||||| ||||| |||||||||||||| | ||||| |||| | ||  | ||||||||||| |||||    
T  14285253 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggttccaagccaattccactcggccaacccaagtgggttt 14285160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 15641808 - 15641845
Alignment:
Q  60 ctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  15641808 ctcgaggacgagcacactcccaggtcccaagtcaatac 15641845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 43442288 - 43442231
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatc 85  Q
    ||||||||| |||||| ||| |||| | |||||| ||||| |||||||||||||||||    
T  43442288 aaattgacaacagagagaatcgaacctgagaccttgaggaggagcacactcccagatc 43442231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 9842858 - 9842898
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaata 96  Q
    |||||||||||| |||||||||||||  |||||||||||||    
T  9842858 agacctcgaggaggagcacactcccaagtcccaagtcaata 9842898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 21549157 - 21549213
Alignment:
Q  64 aggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||| |||||||||||||| ||||||| |||||| || || ||||||||||| ||||    
T  21549157 aggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 21549213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 24652916 - 24652864
Alignment:
Q  72 cacactcccagatcccaagtcaatactaccagaccaacccaagtcggtttata 124  Q
    |||||||||| ||| ||||||||||| |||||||||| ||||||  |||||||    
T  24652916 cacactcccaaatctcaagtcaataccaccagaccaatccaagtgagtttata 24652864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 15786304 - 15786391
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    |||||||||||| ||| ||| |||| | |||||| ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  15786304 aaattgacaccaaagagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatactactagaccaacccaagt 15786391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 8904506 - 8904410
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtttata 124  Q
    |||||| ||||||||| ||| |||| | |||||| ||||| |||||||||| || |||||||||||||||||| || ||||||||||| ||||||||    
T  8904506 aaattggcaccagagagaatcgaacttgagaccttgaggaggagcacactcacatatcccaagtcaatactactaggccaacccaagtgggtttata 8904410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 17745236 - 17745327
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    |||||||||||||||||||| ||| |||||| |||||||||||| |||||||| | ||| ||||||| |||||| || || |||||||||||    
T  17745236 acctaaattgacaccagagagaatcgaacatgagacctcgaggaggagcacacgctcaggtcccaagccaataccactaggccaacccaagt 17745327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 40257491 - 40257396
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtttat 123  Q
    ||||||||||| || | |||||||| | |||||||||||| |||||||||||||| || |||| |||||| ||||| ||||||||||| |||||||    
T  40257491 aaattgacaccggatagaattgaacttgagacctcgaggaggagcacactcccaggtctcaagccaataccaccaggccaacccaagtgggtttat 40257396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 25297881 - 25297771
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||| | |||||||||||| || | || |||  ||| | |||||||||||| |||||||||| ||||||| |||||||||| || |||||||||    
T  25297881 gctaaattatcccacctaaattgacgccggtgagaatcaaacctcagacctcgaggaggagcacactctcagatcctaagtcaataccactagaccaacc 25297782  T
Q  111 caagtcggttt 121  Q
    ||||| |||||    
T  25297781 caagtgggttt 25297771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 9165179 - 9165271
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||||||| |||||||| | |||| | ||||| |||||||||||||| ||||||| |||||| || || ||||||||||| ||||    
T  9165179 aaattggcaccagagagaattgaacctgagactttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 9165271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 33700756 - 33700844
Alignment:
Q  27 taaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    ||||||| ||||||||| ||| |||| | |||||| ||||| |||||||||||||||| ||||| |||||| || || |||||||||||    
T  33700756 taaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccagattccaagccaataccactaggccaacccaagt 33700844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 44126504 - 44126400
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  |||||||||||| ||| ||||| |||  ||  | |||||||| ||| |||||||||||||| ||||| |||||||| ||||| ||||||    
T  44126504 gctaaattagcctacctaaattggcactagagagaatcaaatctgagacctcgtggaggagcacactcccaggtcccaggtcaataccaccaggccaacc 44126405  T
Q  111 caagt 115  Q
    |||||    
T  44126404 caagt 44126400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 21547460 - 21547558
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttta 122  Q
    |||||||||| || |||||| ||| |||| | | |||||||||| |||||| ||||||  ||||||| |||||| || || ||||||||||||||||||    
T  21547460 acctaaattggcatcagagagaatcgaacctgaaacctcgaggaggagcaccctcccatgtcccaagccaataccactaggccaacccaagtcggttta 21547558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 42412664 - 42412757
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttta 122  Q
    |||||||||| ||  | |||||||||||||| || ||||||||||||||||||||||| |||| | |||| ||| | ||||||||||| ||||||    
T  42412664 aaattgacactaggaagaattgaacataagatcttgaggaagagcacactcccagatctcaag-ccataccaccgggccaacccaagttggttta 42412757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 51814603 - 51814493
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | ||| |||||| |||| |||| ||| |||| | |||||| ||||| |||||||||| |||||| ||||||||||| | ||| ||||||    
T  51814603 gctaaattagcccacccaaattggcaccggagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaacc 51814504  T
Q  111 caagtcggttt 121  Q
    ||||| |||||    
T  51814503 caagtgggttt 51814493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 2069747 - 2069663
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||||||||||  | ||||| || |||| ||||||| ||||||| | ||||||||||||||||||| ||||| |||||||||    
T  2069747 aaattgacaccagagggatttgaatatgagacttcgaggaggagcaca-tgccagatcccaagtcaatacaaccaggccaacccaa 2069663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 12587378 - 12587294
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaata 96  Q
    |||||||||  | |||||||||| |||| |||| ||| |||| | |||||||||||| |||||||||| |||||||||||||||||    
T  12587378 gctaaattagcccacctaaattg-caccggagagaatcgaacctgagacctcgaggaggagcacactcacagatcccaagtcaata 12587294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 17440013 - 17439944
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtca 93  Q
    ||||||||||||||  |||| |||  ||||| |||||||||||| |||||||||||||||||| ||||||    
T  17440013 acctaaattgacactggagagaatcaaacatgagacctcgaggaggagcacactcccagatcctaagtca 17439944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 6948059 - 6948147
Alignment:
Q  26 ctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaag 114  Q
    ||||||||||||| | || |||||||||| ||||||||||||  |||||||||||||||  |||   ||||| ||| ||||||||||||    
T  6948059 ctaaattgacaccggtgagaattgaacatgagacctcgaggagcagcacactcccagatgtcaaactaataccacccgaccaacccaag 6948147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 11687626 - 11687702
Alignment:
Q  46 attgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttta 122  Q
    ||||||||| |||||||||  | ||||||||| ||||||||||||||||| | ||  ||||||||||||| ||||||    
T  11687626 attgaacatgagacctcgaaaaggagcacacttccagatcccaagtcaatgccactggaccaacccaagtgggttta 11687702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 6650704 - 6650605
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||| || || |||||||||||||||||||| ||| |||| | |||| | ||||| ||||| |||||| ||||||||| |||||| || || ||||||    
T  6650704 gctaaactaatccacctaaattgacaccagagagaatcgaacctgagacattgaggaggagcatactccccgatcccaagccaataccactaggccaacc 6650605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 12662389 - 12662282
Alignment:
Q  13 taaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaaccca 112  Q
    ||||||| || |||||||||| ||  ||||| ||| |||| | |||| ||||||| ||||||||| ||  ||| ||||||||||| | ||||||||||||    
T  12662389 taaattagtccacctaaattggcattagagataatcgaacctgagacatcgaggaggagcacacttccgtatcacaagtcaataccatcagaccaaccca 12662290  T
Q  113 agtcggtt 120  Q
    ||| ||||    
T  12662289 agtaggtt 12662282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 42983341 - 42983443
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    ||||||||| || || ||||||| |||| |||| ||| |||| |  |||||| |||| || |||||||||||||| ||||||||||| ||||  ||||||    
T  42983341 gctaaattagtccacttaaattggcacctgagagaatcgaacctcggacctcaaggaggaccacactcccagatctcaagtcaataccaccatgccaacc 42983440  T
Q  111 caa 113  Q
    |||    
T  42983441 caa 42983443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 51703872 - 51703786
Alignment:
Q  27 taaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||| |||||||| ||| |||| | | || | ||||| |||||||||||||||| ||||| |||||| || ||||||||||||    
T  51703872 taaattgataccagagagaatcgaacctgaaactttgaggaggagcacactcccagattccaagccaataccactagaccaacccaa 51703786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 2074093 - 2074009
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||||||||||  | ||||| || |||| ||||||| |||||||| |  ||||||||||||||||| ||||| |||||||||    
T  2074093 aaattgacaccagagggatttgaatatgagacttcgaggaggagcacacgct-agatcccaagtcaatacaaccaggccaacccaa 2074009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 4566641 - 4566544
Alignment:
Q  27 taaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtttata 124  Q
    |||||||||| |||||| ||| |||| | |||||  ||||| |||||||||||||| | ||||| |||||  || || ||||||||||| ||||||||    
T  4566641 taaattgacatcagagagaatcgaacctgagaccctgaggaggagcacactcccaggttccaagccaatatcactaggccaacccaagtgggtttata 4566544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 8177166 - 8177235
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    |||||| ||||||||| ||| |||| | | |||| ||||| |||||||||||||||||||||| ||||||    
T  8177166 aaattggcaccagagagaatcgaacctgaaaccttgaggaggagcacactcccagatcccaagccaatac 8177235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 9643793 - 9643862
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    ||||||||||| |||| |||||||  | |||||| ||||| || ||||||||||||||||||| ||||||    
T  9643793 aaattgacaccggagataattgaatctgagaccttgaggatgaacacactcccagatcccaagccaatac 9643862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 9964495 - 9964462
Alignment:
Q  63 gaggaagagcacactcccagatcccaagtcaata 96  Q
    ||||||||||||||||||||||||||||||||||    
T  9964495 gaggaagagcacactcccagatcccaagtcaata 9964462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 31794231 - 31794340
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | ||| |||||||||||||||  ||| ||||   |||||| ||||| |||||||||||||  ||||||| |||||| || || ||||||    
T  31794231 gctaaattagcccacccaaattgacaccagagggaatcgaactctagaccttgaggaggagcacactcccaagtcccaagccaataccactaggccaacc 31794330  T
Q  111 caagtcggtt 120  Q
    ||||| ||||    
T  31794331 caagtgggtt 31794340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 36371562 - 36371469
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||| || |||||| ||| |||| | |||||| ||||| |||||||||||||| | ||||| |||||| || || ||||||||||| |||||    
T  36371562 aaattggcatcagagagaatcgaacctcagaccttgaggaggagcacactcccaggttccaagccaataccactaggccaacccaagtgggttt 36371469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 41508895 - 41508830
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||| ||||| |||||||||||||||||||||  || ||| ||||| ||||||||||| |||||    
T  41508895 agaccttgaggaggagcacactcccagatcccaaaccagtaccaccaggccaacccaagtgggttt 41508830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 52336758 - 52336827
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    |||||||||||||||| ||| |||| | ||| ||  |||| |||||||||||||||||||||| ||||||    
T  52336758 aaattgacaccagagataatcgaacctgagatcttaaggaggagcacactcccagatcccaagccaatac 52336827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 1094621 - 1094525
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||| |||| |||| ||| |||  | |||||||| ||| |||||||||| ||| | |||||||||||| | || |||||||||||| ||||    
T  1094621 acctaaattggcaccggagagaatcgaatttgagacctcgtggaggagcacactcacaggttccaagtcaataccaacaaaccaacccaagtgggtt 1094525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 16893486 - 16893394
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    ||||||||||| |||| ||| |||| | |||||||||||| ||| ||||||||| ||| |||| |||||| | |||  |||||||||| ||||    
T  16893486 aaattgacaccggagaaaatcgaacctgagacctcgaggaggagtacactcccaaatctcaagccaataccaacaggtcaacccaagtgggtt 16893394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 19528339 - 19528403
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||| ||||||||||  |||||||||| |||||| ||||| ||||||||||| ||||    
T  19528339 agaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaacccaagtgggtt 19528403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 28411423 - 28411347
Alignment:
Q  27 taaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccag 103  Q
    ||||||| ||||||||| |||||||  | ||||||| | || |||||||||| || ||||||||||||||| |||||    
T  28411423 taaattggcaccagagagaattgaatctgagacctcaaagaggagcacactctcatatcccaagtcaataccaccag 28411347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 12370256 - 12370193
Alignment:
Q  27 taaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaag 90  Q
    |||||||| ||| |||| |||  ||||| |||||||||||| |||||||||||||| |||||||    
T  12370256 taaattgataccggagagaatcaaacatgagacctcgaggaggagcacactcccaggtcccaag 12370193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 21268004 - 21268071
Alignment:
Q  55 aagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttta 122  Q
    ||||||| ||||| |||||||||||||  ||||||| ||||||||| || ||||| ||||| ||||||    
T  21268004 aagacctagaggaggagcacactcccaagtcccaagccaatactactagcccaactcaagtgggttta 21268071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 26232398 - 26232457
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    ||||||| || | ||||||||||||||||| |||| |||||| || ||||||||||||||    
T  26232398 agacctcaagcaggagcacactcccagatctcaagccaataccactagaccaacccaagt 26232457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 32916787 - 32916871
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaag 114  Q
    |||||| || || ||| |||| ||| |||||||| ||||| ||||||||||| |  ||| ||||||||||||| |||||||||||||    
T  32916787 aaattgtcatcaaagaaaattaaacctaagaccttgaggaggagcacactccaa--tccaaagtcaatactactagaccaacccaag 32916871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 2799954 - 2799892
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaag 90  Q
    |||||| ||||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  2799954 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaag 2799892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 10526932 - 10526830
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | ||| |||||||| ||||||| ||| |||  | |||||| ||||| ||||| |||||||| ||||||| |||||| ||  ||||||||    
T  10526932 gctaaattaacccacccaaattgactccagagagaatcgaatctgagaccttgaggaggagcaaactcccaggtcccaagccaataccactggaccaacc 10526833  T
Q  111 caa 113  Q
    |||    
T  10526832 caa 10526830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 16169992 - 16170054
Alignment:
Q  58 acctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||| ||||| || ||||||||||| |||||||||||||| ||||| | ||||||||| ||||    
T  16169992 accttgaggaggaacacactcccaggtcccaagtcaataccaccaggctaacccaagtgggtt 16170054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 52116748 - 52116850
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | |||| ||||| ||| || || |||||||| | |||| | ||||| |||||||||||||  ||||||| |||||| ||||| ||||||    
T  52116748 gctaaattagcccaccttaattggcactagggagaattgaacctgagacattgaggaggagcacactcccaagtcccaagccaataccaccaggccaacc 52116847  T
Q  111 caa 113  Q
    |||    
T  52116848 caa 52116850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 952568 - 952511
Alignment:
Q  63 gaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    ||||| |||||||||||||| ||||||| ||| || ||||||||||| ||||| ||||    
T  952568 gaggatgagcacactcccaggtcccaagccaacaccaccagaccaactcaagtgggtt 952511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 27223142 - 27223183
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    |||||| || ||||||||||||||||||||| ||||||||||    
T  27223142 agaccttgaagaagagcacactcccagatcctaagtcaatac 27223183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 45235395 - 45235456
Alignment:
Q  60 ctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||||| |||||||||||||  ||||||  |||||| | ||||||||||||||| |||||    
T  45235395 ctcgaggaggagcacactcccaagtcccaaaccaataccatcagaccaacccaagtgggttt 45235456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 11068868 - 11068912
Alignment:
Q  69 gagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||||||  |||||||||||||||| |||||| ||||||||    
T  11068868 gagcacactcctggatcccaagtcaataccaccagatcaacccaa 11068912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 37047036 - 37046984
Alignment:
Q  69 gagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    ||||||||||| || ||||||| ||| || ||||||||||||||||| |||||    
T  37047036 gagcacactccaaggtcccaagccaacaccaccagaccaacccaagtgggttt 37046984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 15290 - 15399
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | |||||||||| || | |||| ||| |||| | |||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||    
T  15290 gctaaattagcccacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacc 15389  T
Q  111 caagtcggtt 120  Q
    ||||| ||||    
T  15390 caagtgggtt 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 30127509 - 30127400
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  |||||||||||| |||| || | ||| |||| | ||||||||| || ||||||||||||||| |||||| |||||| ||||||||||||    
T  30127509 gctaaattaacctacctaaattggcaccggaaagaatcgaacctgagacctcgaagaggagcacactcccagaccccaagccaataccaccagaccaacc 30127410  T
Q  111 caagtcggtt 120  Q
    ||||| ||||    
T  30127409 caagtgggtt 30127400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 33549200 - 33549103
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||||||| || | |||| ||| |||| | |||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||||||| |||||    
T  33549200 acctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggttt 33549103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 12234474 - 12234585
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||| | | ||||||||||||  |||| ||| |||| | ||||||||||   |||||||||||||| |||||||||||||| ||||| ||||||    
T  12234474 gctaaattatcccatctaaattgacactggagagaatcgaacctgagacctcgagagggagcacactcccaggtcccaagtcaataccaccaggccaacc 12234573  T
Q  111 caagtcggttta 122  Q
     |||| ||||||    
T  12234574 taagtgggttta 12234585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 31623003 - 31623069
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttta 122  Q
    |||||||||||| |||||||||||||| ||||||| |||||| ||| ||||||||||||| ||||||    
T  31623003 agacctcgaggaggagcacactcccaggtcccaagccaataccaccggaccaacccaagtgggttta 31623069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 6758402 - 6758493
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    |||||||||||||||||||| ||| || | | |||||||||||  ||||||||||||| |||| ||| |||||| ||||| ||||| |||||    
T  6758402 acctaaattgacaccagagagaatcgatcttgagacctcgaggtggagcacactcccaaatcctaagccaataccaccaggccaacacaagt 6758493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 6776591 - 6776678
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    ||||||| |||||||| |||  ||| | |||| ||||||| |||||||| ||||||||||||| |||||| ||||| |||||||||||    
T  6776591 aaattgaaaccagagagaatcaaacttgagacatcgaggaggagcacacccccagatcccaagccaataccaccaggccaacccaagt 6776678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 24641204 - 24641259
Alignment:
Q  58 acctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||  |||||||||    
T  24641204 acctcgaggaggagcacactcccagatcccaagtcaataccaccaagccaacccaa 24641259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 11423658 - 11423572
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaag 114  Q
    ||||||||||  |||| ||| |||| | ||||||||||||  |||| ||||||| ||||||||||||||| ||||||||| ||||||    
T  11423658 aaattgacactggagaaaatcgaacctgagacctcgaggagaagcatactcccaaatcccaagtcaataccaccagaccagcccaag 11423572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 9433606 - 9433643
Alignment:
Q  60 ctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9433606 ctcgaggaagagcacactcccagatcccaagtcaatac 9433643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 32613123 - 32613211
Alignment:
Q  27 taaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    |||||||||||   ||| ||| |||||| ||| || ||| | ||||||||||||||| ||||||||||||| ||||| |||||||||||    
T  32613123 taaattgacactgaagagaatcgaacatgagatcttgagaaggagcacactcccagaccccaagtcaataccaccaggccaacccaagt 32613211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 1992227 - 1992289
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcc 86  Q
    |||||||||||||| ||||| ||| ||||||||||  |||| ||||| |||||||||||||||    
T  1992227 acctaaattgacactagagagaatcgaacataagatttcgaagaagaacacactcccagatcc 1992289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 12188287 - 12188380
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||| ||| ||||| ||| |||| | | |||| ||||| |||||||||||||| ||||||| |||||| || || ||||||||||| |||||    
T  12188287 aaattggcactagagagaatcgaacttgaaaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttt 12188380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 12633118 - 12633033
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaata 96  Q
    ||||||||| || || ||||||||||   |||| ||| |||||| ||| ||||| || ||||||||||||| ||||||||||||||    
T  12633118 gctaaattagtccacttaaattgacattggagagaatcgaacatgagatctcgaagaggagcacactcccaaatcccaagtcaata 12633033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 9626130 - 9626066
Alignment:
Q  22 ctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcc 86  Q
    |||||||| |||||||| |||| ||| |||||| |||||||||||| ||||| ||||| ||||||    
T  9626130 ctacctaagttgacaccggagagaatcgaacatgagacctcgaggaggagcatactcctagatcc 9626066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 13441102 - 13441055
Alignment:
Q  68 agagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    ||||||||||||||| ||||||| |||||| ||| |||||||||||||    
T  13441102 agagcacactcccaggtcccaagccaataccacccgaccaacccaagt 13441055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 21943429 - 21943480
Alignment:
Q  45 aattgaacataagacctcgaggaagagcacactcccagatcccaagtcaata 96  Q
    |||||||| | ||||||||||||||| ||||||| ||| |||||||||||||    
T  21943429 aattgaaccttagacctcgaggaagaacacactctcaggtcccaagtcaata 21943480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 3715548 - 3715462
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    ||||||||||||||  |||| ||| |||| | ||||||||| ||  |||| ||||||||||| ||||||||||| || || ||||||    
T  3715548 acctaaattgacactggagagaatcgaacttgagacctcgacgagaagcatactcccagatctcaagtcaataccactagcccaacc 3715462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 15951294 - 15951348
Alignment:
Q  36 accagagacaattgaacataagacctcgaggaagagcacactcccagatcccaag 90  Q
    |||||||| |||||||||| |||||| ||||| ||||||||||||| ||| ||||    
T  15951294 accagagagaattgaacatgagaccttgaggaggagcacactcccaaatctcaag 15951348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 14558019 - 14557962
Alignment:
Q  63 gaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    ||||| ||||||||| |||| ||||||| ||| || ||||||||||||||||| ||||    
T  14558019 gaggaggagcacacttccaggtcccaagccaacaccaccagaccaacccaagtgggtt 14557962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 28364029 - 28363968
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaa 89  Q
    |||||||||||||||| ||| |||  | |||||| ||||| |||||||||| ||||||||||    
T  28364029 aaattgacaccagagataatcgaatctgagaccttgaggaggagcacactcgcagatcccaa 28363968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 346637 - 346554
Alignment:
Q  13 taaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    |||||||  |||| |||||||||||  | || ||| |||||| ||||||||||||  |||||||| |||| ||||||||||||||    
T  346637 taaattagcctacttaaattgacacgggtgagaatcgaacatgagacctcgaggagaagcacact-ccaggtcccaagtcaatac 346554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 41202342 - 41202257
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    ||||||||| |||||| |||||||| |||||| ||||||| ||||| ||||||||||| || |||||||| |||||||||||||||    
T  41202342 aaattgacatcagagaaaattgaacctaagacttcgaggaggagcatactcccagatctcaggtcaataccaccagaccaacccaa 41202257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 39715056 - 39714991
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||||||||| |||||||||||||| |||||||||||||| ||||  ||||||||||| |||||    
T  39715056 agacctcgaggaggagcacactcccaggtcccaagtcaataccaccatgccaacccaagtgggttt 39714991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 28846798 - 28846691
Alignment:
Q  13 taaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaaccca 112  Q
    ||||||| |||||| ||||||||| | | || ||| |||| | |||| ||||||| |||||||||||||| |||||||||||||| || ||| ||||| |    
T  28846798 taaattagtctacccaaattgacatcggtgataatcgaacctgagacatcgaggaggagcacactcccaggtcccaagtcaataccactagatcaaccta 28846699  T
Q  113 agtcggtt 120  Q
    ||| ||||    
T  28846698 agtgggtt 28846691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 16918569 - 16918649
Alignment:
Q  35 caccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    ||||||||| |||  ||| |||||||| ||||| |||||||||||||||||||||  |||||| || || |||||||||||    
T  16918569 caccagagagaatccaacctaagaccttgaggaggagcacactcccagatcccaaaccaataccactaggccaacccaagt 16918649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 19244201 - 19244109
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||||||| ||| |||| | |||||| | ||| |||||||||| ||| |||||||||||||| |  |||||||||||||| ||||    
T  19244201 aaattggcaccagagagaatcgaacctgagaccttggggaggagcacactctcaggtcccaagtcaataccagtagaccaacccaagtgggtt 19244109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 21213865 - 21213777
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaaccca 112  Q
    |||||||||| |||| | || ||| |||| | ||||||| |||| || ||||||||||| ||||||| |||||| ||||||||||||||    
T  21213865 acctaaattggcaccggggagaatcgaacctgagacctcaaggaggaacacactcccaggtcccaagccaataccaccagaccaaccca 21213777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 42602663 - 42602551
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | ||| |||||| |||| |||| |||  ||| |||||||| ||| | |||||||||||||| ||||||| |||||| || || ||||||    
T  42602663 gctaaattagcccacccaaattggcaccggagagaatcaaacctaagaccttgagaaggagcacactcccaggtcccaagccaataccactaggccaacc 42602564  T
Q  111 caagtcggtttat 123  Q
    ||||| |||||||    
T  42602563 caagtgggtttat 42602551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 6760947 - 6760892
Alignment:
Q  60 ctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    ||||| || ||||| |||||||||||||||  ||||||||||||||||||||||||    
T  6760947 ctcgatgaggagcatactcccagatcccaaaccaatactaccagaccaacccaagt 6760892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 1729908 - 1729814
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttta 122  Q
    |||||| ||||||||| |||  ||  |||||||| ||||| |||||||||||||  ||||||| |||||| || || ||||||||||| ||||||    
T  1729908 aaattggcaccagagagaatcaaatctaagacctagaggaggagcacactcccaagtcccaagccaataccactagcccaacccaagtgggttta 1729814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 34041600 - 34041666
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttta 122  Q
    |||||| ||||| |||||||||| ||||||| |||||||||| || || ||||||||||| ||||||    
T  34041600 agaccttgaggaggagcacactctcagatcctaagtcaataccactaggccaacccaagtgggttta 34041666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 19016140 - 19016031
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  |||| ||||||| |||| | || |||  ||| | |||||||||||| |||||||||||||  || |||| |||||| | ||||||||||    
T  19016140 gctaaattagcctacttaaattggcaccggggagaatcaaacttgagacctcgaggaggagcacactcccaagtctcaagccaataccatcagaccaacc 19016041  T
Q  111 caagtcggtt 120  Q
    ||||| ||||    
T  19016040 caagtgggtt 19016031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 29197356 - 29197453
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||||||| |||| |  | ||| |||||| |||| || |||| |||||||||||||  |||||||||||||| ||||  ||||||||||| |||||    
T  29197356 acctaaattggcaccgggaagaatcgaacatgagacatcaaggaggagcacactcccaagtcccaagtcaataccaccaagccaacccaagtgggttt 29197453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 37480139 - 37480074
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||| ||||| |||||||||| ||| ||||||| |||||| ||||| ||||||||||| |||||    
T  37480139 agaccttgaggaggagcacactctcaggtcccaagccaataccaccaggccaacccaagtgggttt 37480074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 42327362 - 42327471
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | ||| |||||| ||||  ||| ||| |||| | |||||| ||||| |||||||||||||| ||||||| |||||| || || ||||||    
T  42327362 gctaaattagcccacccaaattggcaccgaagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacc 42327461  T
Q  111 caagtcggtt 120  Q
    ||||| ||||    
T  42327462 caagtgggtt 42327471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 3001464 - 3001384
Alignment:
Q  35 caccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    ||||||||| ||| |||| | ||| ||| |||| ||||||||||| ||||| ||||||||||| || || |||||||||||    
T  3001464 caccagagataatcgaacctgagatctcaaggaggagcacactcctagatctcaagtcaataccactaggccaacccaagt 3001384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 5147691 - 5147755
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||| | ||||| ||||||||||| ||||||||||| || |||||||||||||| ||||    
T  5147691 agaccttgagaaggagcatactcccagatctcaagtcaataccactagaccaacccaagtgggtt 5147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 26545904 - 26545840
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||| | ||||||||| ||||||||||||  ||||| |||| |||||||||||| ||||    
T  26545904 agacctcgagaaggagcacacttccagatcccaagctaataccaccaaaccaacccaagtgggtt 26545840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 29503363 - 29503268
Alignment:
Q  27 taaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtttat 123  Q
    |||||||||||| | || ||| |||| | |||||| ||||| |||||||||||||| ||||||  |||||| || || ||||||||||| |||||||    
T  29503363 taaattgacaccgg-gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaaaccaataccactaggccaacccaagtgggtttat 29503268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 40416374 - 40416466
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||||||| ||| |||| | ||||||  |||| ||||| |||||||| | |||||||||||| || || ||||||||||| ||||    
T  40416374 aaattggcaccagagagaatcgaacctgagaccttaaggaggagcatactcccaggttccaagtcaataccactaggccaacccaagtgggtt 40416466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 42860412 - 42860348
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||||| |||||||||||||| || ||||||||||  ||||| ||||| ||||| ||||    
T  42860412 agacctcgaggaggagcacactcccaggtctcaagtcaatatcaccaggccaactcaagtaggtt 42860348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 12994396 - 12994446
Alignment:
Q  64 aggaagagcacactcccagatcccaagtcaatactaccagaccaacccaag 114  Q
    |||| |||||||||||||| |||||||||||||| || |||||||| ||||    
T  12994396 aggaggagcacactcccaggtcccaagtcaataccactagaccaactcaag 12994446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 33582082 - 33582004
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaa 89  Q
    ||||||||| || |||||||||||||  ||||| ||| |||| | ||||||| |||| |||||||||| ||| ||||||    
T  33582082 gctaaattagtccacctaaattgacattagagagaatcgaacctgagacctcaaggaggagcacactctcaggtcccaa 33582004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 7799051 - 7799112
Alignment:
Q  60 ctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||||| |||||||||||||  ||||||| |||||| |||||  |||||||||| |||||    
T  7799051 ctcgaggaggagcacactcccaagtcccaagccaataccaccaggacaacccaagtgggttt 7799112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 11251183 - 11251110
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    |||||||||||||||||||| |||  ||| | |||||| ||||| ||||||||| |||  ||||||| ||||||    
T  11251183 acctaaattgacaccagagagaatcaaacctgagaccttgaggaggagcacacttccaagtcccaagccaatac 11251110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 30410533 - 30410602
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    |||||| ||||||||| ||| |||||| || ||| ||||| ||||||||||| || ||||||| ||||||    
T  30410533 aaattggcaccagagaaaatcgaacatgagtccttgaggaggagcacactcctaggtcccaagccaatac 30410602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 30907623 - 30907676
Alignment:
Q  39 agagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtc 92  Q
    ||||| |||||||||| |||| ||||||| |||||||||||||  |||||||||    
T  30907623 agagaaaattgaacatgagacgtcgaggaggagcacactcccaagtcccaagtc 30907676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 42922507 - 42922414
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctc-gaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||||||| ||| |||| | ||||||  ||||| |||||||||||||| | ||||| |||||| || || ||||||||||| ||||    
T  42922507 aaattggcaccagagagaatcgaacctgagacctttgaggaggagcacactcccaggttccaagccaataccactaggccaacccaagtgggtt 42922414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 45026835 - 45026742
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||| ||||||||| |||  ||||| |||||| ||||| ||||||||||| |  | |||||||| |||||  ||||||| |||||| |||||    
T  45026835 aaattggcaccagagagaatcaaacatgagaccttgaggaggagcacactcctaagttccaagtcattactaatagaccaaaccaagtgggttt 45026742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 4438971 - 4439055
Alignment:
Q  36 accagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| | ||| ||||||  ||||| ||||| |||||||||| |||||||||||| ||||| |  || ||||||||||| ||||    
T  4438971 accagaaagaatcgaacatgcgaccttgaggaggagcacactctcagatcccaagttaataccattaggccaacccaagtgggtt 4439055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 11620 - 11534
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaag 114  Q
    ||||| |||||||||| ||| |||| | |||||||||||| |||||||||||||||||||||| |||||| ||||| ||| ||||||    
T  11620 aaattaacaccagagagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccaataccaccaggccatcccaag 11534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 22760927 - 22760863
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  22760927 agaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 5934229 - 5934151
Alignment:
Q  12 ctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaag 90  Q
    |||||||| || |||||||||||||||||||  ||| |||||| | ||||| |||| ||||||||||||||||||||||    
T  5934229 ctaaattagtccacctaaattgacaccagagggaatcgaacatgaaacctcaaggaggagcacactcccagatcccaag 5934151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 15137645 - 15137553
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||||||||| |||  ||| | |||||| ||||| ||||||||||| | ||||||||||| ||| ||||| ||||||||||| ||||    
T  15137645 aaattgacaccagagagaatctaacctgagaccttgaggaggagcacactcctaaatcccaagtcagtaccaccaggccaacccaagtgggtt 15137553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 26459394 - 26459486
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||||||| ||| |||| | |||||| ||||| |||||||||||||| ||||||| |||||| || || ||||||||||| ||||    
T  26459394 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 2446417 - 2446307
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | |||||||| | |||| |||| ||| |||| | ||| |||||||| |||||||||||||  ||||||| |||||| | ||||||||||    
T  2446417 gctaaattagcccacctaaatcggcaccggagagaatcgaacttgagatctcgaggaggagcacactcccaagtcccaagccaataccatcagaccaacc 2446318  T
Q  111 caagtcggttt 121  Q
    ||||| |||||    
T  2446317 caagtgggttt 2446307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 7721478 - 7721400
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaa 89  Q
    |||||||||||| | | |||||||||||||||| ||| |||||| |||||| ||||| ||| |||||||||| ||||||    
T  7721478 gctaaattattccatccaaattgacaccagagagaatcgaacatgagaccttgaggaggagtacactcccaggtcccaa 7721400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 17041024 - 17041094
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtttataat 126  Q
    |||||| ||||| ||||||||| |||||||||||| |||| | || |||||||||||||| ||||||||||    
T  17041024 agaccttgaggaggagcacacttccagatcccaagccaatgccactagaccaacccaagtgggtttataat 17041094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 30579444 - 30579334
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | |||||||||| ||||||||| ||| |||| | |||||| ||||| | | |||||||||| || |||| |||||| ||||| ||||||    
T  30579444 gctaaattagcccacctaaattggcaccagagaaaatcgaacctgagaccttgaggaggtggacactcccaggtctcaagccaataccaccaggccaacc 30579345  T
Q  111 caagtcggttt 121  Q
    ||||| |||||    
T  30579344 caagtgggttt 30579334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 23595791 - 23595734
Alignment:
Q  58 acctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    |||| ||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  23595791 accttgaggaggagcacactccgagatctcaagtcaataccaccagaccaacccaagt 23595734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 23301614 - 23301678
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    ||||||| |||| |||||||||||||  |||||||||||||| ||||| ||||||||||| ||||    
T  23301614 agacctcaaggaggagcacactcccaagtcccaagtcaataccaccaggccaacccaagtgggtt 23301678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 41519232 - 41519335
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||||||  | |||||||||||||| ||||| ||  |||| | |||||| ||||| ||||||||||| | ||||||||||||||| || || ||||||    
T  41519232 gctaaattagcccacctaaattgacac-agagagaagcgaacctgagaccttgaggaggagcacactcctaaatcccaagtcaataccactaggccaacc 41519330  T
Q  111 caagt 115  Q
    |||||    
T  41519331 caagt 41519335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 48772002 - 48771938
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    ||||||| |||| |||||||||||||||||||||| |||||| ||||  ||||||||||| ||||    
T  48772002 agacctcaaggaggagcacactcccagatcccaagccaataccaccaagccaacccaagtgggtt 48771938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 23552212 - 23552117
Alignment:
Q  26 ctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||||| ||  ||||| ||| |||| | |||||| ||||| |||||||||||||| |||||||||||||  || || ||||||||||| |||||    
T  23552212 ctaaattggcattagagagaatcgaacttgagaccttgaggaggagcacactcccaggtcccaagtcaatagcactaggccaacccaagtgggttt 23552117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 19553549 - 19553460
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaag 114  Q
    ||||||||||  ||| | || |||||||| |||||||| ||||| |||||||||||||| | ||||| |||||| ||||| ||||||||||    
T  19553549 acctaaattggaaccggggagaattgaacctaagaccttgaggaggagcacactcccaggt-ccaagccaataccaccaggccaacccaag 19553460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 43215265 - 43215183
Alignment:
Q  39 agagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    ||||| ||| |||| | |||||| ||||| ||||||||||| || ||||||| |||||| || |||||||||||||| |||||    
T  43215265 agagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaagtgggttt 43215183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 25655212 - 25655305
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||| ||||||||| ||| |||| | | |||| ||||| || ||||||| |||||||||||||||||| || | ||||||||| || |||||    
T  25655212 aaattggcaccagagagaatcgaacctgaaaccttgaggaggatcacactcacagatcccaagtcaataccactaaaccaacccaggtgggttt 25655305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 42836020 - 42836077
Alignment:
Q  63 gaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||||||||||||| ||||||| |||||| || || ||||||||||| ||||    
T  42836020 gaggaagagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42836077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 5273574 - 5273666
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| |||| ||||||||  ||| |||||||| ||||| ||||||||||  || ||||||| ||| || ||||| ||||||||||| ||||    
T  5273574 aaattggcaccggagacaatcaaacctaagaccttgaggaggagcacactctaaggtcccaagccaacaccaccaggccaacccaagtgggtt 5273666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 7801244 - 7801180
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| || || |||||||||||||| |||||||||||||| ||||| |||| |||||| ||||    
T  7801244 agaccttgaagaggagcacactcccaggtcccaagtcaataccaccaggccaaaccaagtgggtt 7801180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 20335843 - 20335907
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||||| |||||||||||||  ||||||| ||||||  | |||||||||||||| ||||    
T  20335843 agacctcgaggaggagcacactcccaagtcccaagccaatacctctagaccaacccaagtgggtt 20335907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 25590703 - 25590611
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||||  ||| ||| ||||   |||||||||||| ||||||||||||||||| |||| |||||| | |||  |||||||||| ||||    
T  25590703 aaattgacaccgaagaaaatcgaacccgagacctcgaggaggagcacactcccagatctcaagccaataccaacaggtcaacccaagtgggtt 25590611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 33869429 - 33869521
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||||||||||||| ||| ||||   |||||| ||| | ||||||||| |||| || |||| ||||||||| || ||||||||||| ||||    
T  33869429 aaattgacaccagagagaatcgaaccagagaccttgagaaggagcacacttccaggtctcaagccaatactactaggccaacccaagtgggtt 33869521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 2883046 - 2882991
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcc 79  Q
    |||||||||| ||||||||| |||||||| | |||||| ||||| |||||||||||    
T  2883046 acctaaattgccaccagagagaattgaacctgagaccttgaggaggagcacactcc 2882991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 21558237 - 21558146
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactacca 102  Q
    |||||||||  | |||||||||| ||||||||| ||| |||| | |||||| ||||| ||||||| ||  || | |||||||||||||||||    
T  21558237 gctaaattaacccacctaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacattcttaggttccaagtcaatactacca 21558146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 25956279 - 25956361
Alignment:
Q  30 attgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    ||||||||||| || |||||||| |||||||| ||| | ||||||||||| || ||||||| |||||| || || |||||||||    
T  25956279 attgacaccagggagaattgaacctaagaccttgag-aggagcacactccaaggtcccaagccaataccactaggccaacccaa 25956361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 37085563 - 37085618
Alignment:
Q  58 acctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||||| ||||||||||||| |||||||| |||||| ||||  |||||||||    
T  37085563 acctcgaggatgagcacactcccaaatcccaagccaataccaccatgccaacccaa 37085618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 29785285 - 29785347
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaag 90  Q
    |||||| ||||||| | ||| |||||| |||||| ||||| ||||||||| ||||||||||||    
T  29785285 aaattggcaccagaaagaatcgaacatgagaccttgaggaggagcacacttccagatcccaag 29785347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 33222462 - 33222384
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagacc 106  Q
    |||||||||||||||| ||| |||| | |||||| ||||| ||| ||||| |||| ||||||| |||||| || |||||    
T  33222462 aaattgacaccagagagaatcgaacctgagaccttgaggatgagtacacttccaggtcccaagccaataccactagacc 33222384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 36803646 - 36803696
Alignment:
Q  63 gaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    ||||| ||||| |||||||| |||||||||||||| || ||||||||||||    
T  36803646 gaggaggagcatactcccaggtcccaagtcaataccactagaccaacccaa 36803696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 42712067 - 42711997
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactccca 81  Q
    |||||||||  | |||||||||||||| || || ||| |||||| |||||| ||||| |||||||||||||    
T  42712067 gctaaattagcccacctaaattgacactagggagaatcgaacatgagaccttgaggaggagcacactccca 42711997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 45976892 - 45976994
Alignment:
Q  13 taaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaaccca 112  Q
    |||||||  |||| ||||||| || |||||| || ||||| ||| ||||  |||| |||||||||||||| || |||| |||||| || || ||||||||    
T  45976892 taaattaacctacttaaattggcatcagagataaatgaacttaaaaccttaaggaggagcacactcccaggtcacaagccaataccactaggccaaccca 45976991  T
Q  113 agt 115  Q
    |||    
T  45976992 agt 45976994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 13106776 - 13106860
Alignment:
Q  38 cagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtttat 123  Q
    |||||| ||| |||| | |||||| ||||| ||| ||||||| ||||||||| |||||||||| ||| |||||||| | |||||||    
T  13106776 cagagagaatcgaacctgagaccttgaggaggagtacactcc-agatcccaaatcaatactactagatcaacccaactgggtttat 13106860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 22932734 - 22932787
Alignment:
Q  67 aagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||||||||| ||||||| |||||| |||| |||||||||||| ||||    
T  22932734 aagagcgcactcccaggtcccaagccaataccaccataccaacccaagtgggtt 22932787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 25021354 - 25021411
Alignment:
Q  63 gaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    ||||| |||||||||||||| ||||||| |||||| || || ||||||||||| ||||    
T  25021354 gaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 25021411  T

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Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 38374579 - 38374676
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggttt 121  Q
    |||||||||| |||| | || ||| |||| |||||||| ||||| ||||||||||  || ||||||| ||| || ||||  ||||||||||| |||||    
T  38374579 acctaaattggcaccggggagaatcgaacctaagaccttgaggaggagcacactctaaggtcccaagccaacaccaccacgccaacccaagtgggttt 38374676  T

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Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 45709720 - 45709777
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||||||| |||||||||| |||||||||||  ||||| || || |||||||||    
T  45709720 agacctcgaggaggagcacactctcagatcccaagctaataccactaggccaacccaa 45709777  T

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Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 4161339 - 4161295
Alignment:
Q  69 gagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    ||||||||| | |||||||||| |||||| |||||||||||||||    
T  4161339 gagcacacttcaagatcccaagccaataccaccagaccaacccaa 4161295  T

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Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 9183175 - 9183231
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagat 84  Q
    |||||||||||||||| ||| |||| | |||| | ||||| ||||||||||||||||    
T  9183175 aaattgacaccagagataatcgaacctgagactttgaggaggagcacactcccagat 9183231  T

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Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 21854605 - 21854553
Alignment:
Q  63 gaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    ||||| ||||||||||||||||||| || |||||| | ||| |||||||||||    
T  21854605 gaggaggagcacactcccagatccctagccaataccatcaggccaacccaagt 21854553  T

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Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 26703189 - 26703149
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaata 96  Q
    |||||||||| | |||||||||||||||||||||| |||||    
T  26703189 agacctcgagaaggagcacactcccagatcccaagccaata 26703149  T

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Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 28236593 - 28236653
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtc 116  Q
    |||||||||||| |||| ||||||||| ||||||| |||||| | || | |||||||||||    
T  28236593 agacctcgaggaggagcgcactcccaggtcccaagccaataccatcaaatcaacccaagtc 28236653  T

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Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 31835284 - 31835192
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| |||||| || ||| |||| | |||||| ||||| ||||||||||| ||  |||||| ||| || ||||| ||||||||||| ||||    
T  31835284 aaattggcaccagggataatcgaacctgagaccttgaggaggagcacactccaagcacccaagccaacaccaccaggccaacccaagtgggtt 31835192  T

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Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 33362707 - 33362639
Alignment:
Q  45 aattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||||| | | |||||||||| ||||||| || || ||| ||||||||||| |||| ||||||||||    
T  33362707 aattgaacctcaaacctcgaggaggagcacattctcaaatctcaagtcaataccaccataccaacccaa 33362639  T

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Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 39631936 - 39631844
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagtcggtt 120  Q
    |||||| ||| ||||| ||| |||| | |||||| ||||| ||||  |||||||| ||||||| |||||| || || ||||||||||| ||||    
T  39631936 aaattggcacaagagagaatcgaacctgagaccttgaggaggagcttactcccaggtcccaagccaataccactaggccaacccaagtgggtt 39631844  T

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Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 43663062 - 43663166
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    ||||||||| || ||| ||||||| ||| |||| | | |||| | ||| |||||||| || ||| |||| || |||||||||||||| | ||| ||||||    
T  43663062 gctaaattagtccacccaaattgataccggagagattcgaacctgagatctcgaggaggaccacgctcctaggtcccaagtcaataccatcaggccaacc 43663161  T
Q  111 caagt 115  Q
    |||||    
T  43663162 caagt 43663166  T

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Target: scaffold0118 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 41599 - 41709
Alignment:
Q  10 ggctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaac 109  Q
    ||||||||||  | ||| ||||||||| |||||| |||||||| | |||||||||||| ||||| |||| |||||| |||| |||||| || || |||||    
T  41599 ggctaaattagcccacccaaattgacatcagagagaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaataccactaggccaac 41698  T
Q  110 ccaagtcggtt 120  Q
    |||||| ||||    
T  41699 ccaagtgggtt 41709  T

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Target: scaffold0032 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 112391 - 112282
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    ||||||||| || |||||||||| |||| |||| ||| |||| | ||||||| | || || ||||||||||||| ||||| |||||| ||||| ||||||    
T  112391 gctaaattagtccacctaaattggcaccggagagaatcgaacctcagacctcaaagaggaccacactcccagattccaagccaatacaaccaggccaacc 112292  T
Q  111 caagtcggtt 120  Q
    ||||| ||||    
T  112291 caagtgggtt 112282  T

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Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 94954 - 95042
Alignment:
Q  27 taaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    ||||||| ||||||||| |||||||| | |||||| ||||| |||||||||||||| | ||||| |||||| || || |||||||||||    
T  94954 taaattggcaccagagataattgaacctgagaccttgaggaggagcacactcccaggttccaagccaataccactaggccaacccaagt 95042  T

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Target: scaffold0074 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 45739 - 45814
Alignment:
Q  24 acctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatacta 99  Q
    |||||||||||||||||||| ||| |||||| ||||||| |||| || |||||||| || ||||||| ||||||||    
T  45739 acctaaattgacaccagagagaatcgaacatgagacctcaaggaggaacacactcctaggtcccaaggcaatacta 45814  T

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Target: scaffold1367 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 835 - 910
Alignment:
Q  39 agagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaag 114  Q
    ||||| ||| |||| | |||| ||||||| ||||||| |||||||||||||| |||||| ||||| ||| ||||||    
T  835 agagagaatcgaacctgagacttcgaggaggagcacattcccagatcccaagccaataccaccaggccaccccaag 910  T

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Target: scaffold0194 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 13030 - 13117
Alignment:
Q  28 aaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaagt 115  Q
    ||||||||| | |||| ||| |||| | |||||| ||||| ||||||||||||||||| |||| |||||| ||||  |||||| ||||    
T  13030 aaattgacatcggagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagccaataccaccaagccaaccgaagt 13117  T

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Target: scaffold0065 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 12298 - 12196
Alignment:
Q  11 gctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacc 110  Q
    |||||| || || ||||||||||| |||||||| |||| ||| | |||||| ||||| ||||| ||||| || ||||||| ||| || || || ||||||    
T  12298 gctaaactaatccacctaaattgataccagagagaatttaactttagaccttgaggaggagcaaactccaaggtcccaagccaacaccactaggccaacc 12199  T
Q  111 caa 113  Q
    |||    
T  12198 caa 12196  T

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Target: scaffold0291 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 2482 - 2539
Alignment:
Q  56 agacctcgaggaagagcacactcccagatcccaagtcaatactaccagaccaacccaa 113  Q
    |||||| ||||| |||||||||||||||||| ||  |||||| ||| |||||||||||    
T  2482 agaccttgaggaggagcacactcccagatccaaaaccaataccaccggaccaacccaa 2539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 93055 - 92970
Alignment:
Q  12 ctaaattattctacctaaattgacaccagagacaattgaacataagacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    |||||||| || ||||||||||  ||| || | ||| |||| | ||||||| |||| || ||||||||||||| ||||||||||||    
T  93055 ctaaattagtccacctaaattggtacctgaaagaatcgaacctcagacctcaaggaggatcacactcccagattccaagtcaatac 92970  T

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Target: scaffold0591 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 5682 - 5646
Alignment:
Q  63 gaggaagagcacactcccagatcccaagtcaatacta 99  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  5682 gaggaagagtacactctcagatcccaagtcaatacta 5646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 157000 - 157040
Alignment:
Q  57 gacctcgaggaagagcacactcccagatcccaagtcaatac 97  Q
    ||||||||||| ||||||||||||||||| |||| ||||||    
T  157000 gacctcgaggaggagcacactcccagatctcaagccaatac 157040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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