View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_69 (Length: 254)
Name: NF2848_low_69
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 28229127 - 28228948
Alignment:
| Q |
18 |
ataaatatttatcttcatcttcacgaagcacttgagcattctttttgttatcatcaaccttagttaaatccggtggaaggaggtgaattgattattgatt |
117 |
Q |
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| T |
28229127 |
ataaatgtttatcttcatcttcacgaagcacttgagcattctttttgttatcatcaaccttagttaaatccggtggaagggggtgaattgattattgatt |
28229028 |
T |
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| Q |
118 |
tggtgagttggatacagtgaaaccaataagaggtgaaatggtgaatgggtcatggctcaattttgtggttgttaaattaa |
197 |
Q |
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| T |
28229027 |
tagtgaattggatacggtaaaatcaatgagaggtgaaatggtgaatgggtcatggctcaattttgtggttgttaaattaa |
28228948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 40453854 - 40453794
Alignment:
| Q |
25 |
tttatcttcatcttcacgaagcacttgagcattctttttgttatcatcaaccttagttaaa |
85 |
Q |
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| T |
40453854 |
tttatcttcatcttcatgaagcacttgagcattctttttgttatcatcaaccttagttaaa |
40453794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 41869694 - 41869621
Alignment:
| Q |
107 |
gattattgatttggtgagttggatac-agtgaaaccaataagaggtgaaatggtgaatgggtcatggctcaatt |
179 |
Q |
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| T |
41869694 |
gattattgatttggtgaattggataatagtgaaatcaatgagaggtgaaatggcgaatgggtcttggctcaatt |
41869621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 12229373 - 12229425
Alignment:
| Q |
193 |
attaagcgggttaagggatggaattttaaatgattaaactttgaaagaataat |
245 |
Q |
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| T |
12229373 |
attaagtgggttaagggacgaaatttttaatgattaaactttgcaagaataat |
12229425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 5455955 - 5455908
Alignment:
| Q |
192 |
aattaagcgggttaagggatggaattttaaatgattaaactttgaaag |
239 |
Q |
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| T |
5455955 |
aattaagtgggtgtagggatgaaattttaaatgattaaactttgaaag |
5455908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 18855955 - 18855997
Alignment:
| Q |
193 |
attaagcgggttaagggatggaattttaaatgattaaactttg |
235 |
Q |
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| T |
18855955 |
attaagtgggttaagggacgaaattttaaatgattaaactttg |
18855997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 43607894 - 43607852
Alignment:
| Q |
193 |
attaagcgggttaagggatggaattttaaatgattaaactttg |
235 |
Q |
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| T |
43607894 |
attaaacgggtcaagggatgaaattttaaatgattaaactttg |
43607852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 30642447 - 30642499
Alignment:
| Q |
193 |
attaagcgggttaagggatggaattttaaatgattaaactttgaaagaataat |
245 |
Q |
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| T |
30642447 |
attaagtgggtcaagggacgaaattttaaatgattaaactttgcaagactaat |
30642499 |
T |
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