View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_7 (Length: 603)
Name: NF2848_low_7
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 42 - 587
Target Start/End: Original strand, 48254801 - 48255345
Alignment:
| Q |
42 |
taactaatagacataagttactcttactttaatggtagcggcaatttgtgaaacaacttgagggagaaactcttgcacaccacctgtgccaatgactgct |
141 |
Q |
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| T |
48254801 |
taactaatagacataagttactcttactttaatggtagcggcaatttgtgaaacaacttgagggagaaactcttgcacaccacctgtgccaatgactgct |
48254900 |
T |
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| Q |
142 |
aggttggaagtgaaatcattttggccaatataaaatgtatacaaagattttccaagtatatctggtgatggaagtttggtttctgagcaacaattaaaag |
241 |
Q |
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| T |
48254901 |
aggttggaagtgaaatcattttggccaatataaaatgtatacaaagattttccaagtatatctggtgatggaagtttggtttctgagcaacaattaaaag |
48255000 |
T |
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| Q |
242 |
aaaatagtatgttaatatattaacgaaggaaattaaaaggactaaacttagatgcagtagcagacgtaattttcgaaccattttaaaattgttagtgcca |
341 |
Q |
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| T |
48255001 |
aaattagtatgttaatatattaacgaaggaaattaaaagga-taaacttagatgcagtaccagacgtaattttcaaaccattttaaaattgttagtgcca |
48255099 |
T |
|
| Q |
342 |
gttataagagtagacagtttgtgcattatgtaccttgttgatcagcttctttaactttggttgcaaattgtttcatttggttgagctgaatagcaaggga |
441 |
Q |
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| T |
48255100 |
gttataagagtagaaagtttgtgcattatgtaccttgttgatcagcttctttaactttggttgcaaattgtttcatttgggtgagctgaatagcaaggga |
48255199 |
T |
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| Q |
442 |
gaaagggctgatcccagtgacaaacaaagaagtattaggtagaagcacagtggatgccaatgtagcatagttggctccatgtttataataagatcctatt |
541 |
Q |
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| T |
48255200 |
gaaagggctgatcccagtgacaaacaaagaagtattaggtagaagcacagtggatgccaatgtagcatagttggctccatgtttataataagatcctatt |
48255299 |
T |
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| Q |
542 |
gattgtagatatggactcaaaaatggaattccaatagcttgagctg |
587 |
Q |
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| T |
48255300 |
gattgtagatatggactcaaaaatggaattccaatagcttgagctg |
48255345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 39282357 - 39282245
Alignment:
| Q |
47 |
aatagacataagttactcttactttaatggtagcggcaatttgtgaaacaacttgagggagaaactcttgcacaccacctgtgccaatgactgctaggtt |
146 |
Q |
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||||| |||||| || ||||| |||||||| || ||||| ||||||| |||| || | ||| |||| ||||| | |||| |||| |||||||||| ||| |
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| T |
39282357 |
aatagtcataaggtatccttaccttaatggtggcagcaatctgtgaaataactagaagcagatactcgtgcactctacctatgccgatgactgctacgtt |
39282258 |
T |
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| Q |
147 |
ggaagtgaaatca |
159 |
Q |
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| T |
39282257 |
ggaagtgaaatca |
39282245 |
T |
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