View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_78 (Length: 241)
Name: NF2848_low_78
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_78 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 4803759 - 4803624
Alignment:
| Q |
104 |
aatggtttaccagaagttgctgaatatcccttttgcaactctaagcaaacgttaagactgtcacacacaattcccttttaaaagtctaaagtcacaatgc |
203 |
Q |
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| T |
4803759 |
aatggtttaccagaagttgctgaatatcccttttgcaactctaagcaaacgttaagactgtcacacacaattcccttttaaaagtctaaagtcacaatgc |
4803660 |
T |
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| Q |
204 |
cgcattgcatttttctaataacatctcacttctgtg |
239 |
Q |
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| T |
4803659 |
cgcatagcatttttctaataacatctcacttctgtg |
4803624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 4806320 - 4806193
Alignment:
| Q |
1 |
accgacacaagaatcagaccgaagttcttgaatagaagtgtcggttttcggtggttcttggtttcaaaaagatatattgaacctggttttcatttgtatg |
100 |
Q |
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| T |
4806320 |
accgacacaagaatcagactgaagttcttgaatgcaaacgtcggtttt-ggtggttctttcttccgaaaagatatatt-aacctggttttcatttgtgtg |
4806223 |
T |
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| Q |
101 |
tgtaatggtttaccagaagttgctgaatat |
130 |
Q |
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| T |
4806222 |
tgtaatgatttaccagaagttgctgaatat |
4806193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4803831 - 4803760
Alignment:
| Q |
1 |
accgacacaagaatcagaccgaagttcttgaatagaagtgtcggttttcggtggttcttggtttcaaaaaga |
72 |
Q |
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| T |
4803831 |
accgacacaagaatcagaccgaagttcttgaatgcaagtgtcggttttcggtggttcttggtttcaaaaaga |
4803760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 4824232 - 4824146
Alignment:
| Q |
44 |
gttttcggtggttcttggtttcaaaaagatatattgaacctggttttcatttgtatgtgtaatggtttaccagaagttgctgaatat |
130 |
Q |
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| T |
4824232 |
gtttttggtggtttttgcttccaaaaggatatattgaacctggtttacatttgtgagtgtcatgttttaccagaagtttctgaatat |
4824146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 4819204 - 4819127
Alignment:
| Q |
53 |
ggttcttggtttcaaaaagatatattgaacctggttttcatttgtatgtgtaatggtttaccagaagttgctgaatat |
130 |
Q |
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| T |
4819204 |
ggttcttgcttccaaaaagatatactgaacctggtttacatttgcgtgtataatggtttatttgaagtttctgaatat |
4819127 |
T |
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