View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_82 (Length: 238)
Name: NF2848_low_82
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_82 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 3307935 - 3308140
Alignment:
| Q |
22 |
aacctcaatctgtacacatggacaatgtataggaaactgtcaaaattgagcatgatacaaataacata-------acaagctaattggtcttgtgacctt |
114 |
Q |
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| T |
3307935 |
aacctgaatctgtacacgtggacaaa-tacaggaaactgtcaaaattgagcacgatacaaataacatatataataacaagctaattggtcttgtgatctt |
3308033 |
T |
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| Q |
115 |
aattttccaatgctgtataaataatcttgttacatgattcatgaaagagttgattgaagttagcaagtatcagacatcaatacataatatatagcataat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308034 |
aattttccaatgctgtataaataatcttgttacatgattcatgaaagagttgattgaagttagcaagtatcagacatcaatacataatatatagcataat |
3308133 |
T |
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| Q |
215 |
caaaaat |
221 |
Q |
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||||||| |
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| T |
3308134 |
caaaaat |
3308140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 3216452 - 3216306
Alignment:
| Q |
54 |
gaaactgtcaaaattgagcatgatacaaataacataacaagctaattggtcttgtgaccttaattttccaatgctgtataaataatcttgttacatgatt |
153 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| |
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| T |
3216452 |
gaaactgtcaatattgagcatgatacaaataacataac----taattggtcttgtgaccttaattttccaatgctgataaaacaatcttgatacatgatt |
3216357 |
T |
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| Q |
154 |
catgaaagagttgattgaag-ttagcaagtatcagacatcaatacataata |
203 |
Q |
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| T |
3216356 |
tataaaagagctgattgaagtttagcaagtatcagacatcaatacataata |
3216306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 3296809 - 3296918
Alignment:
| Q |
54 |
gaaactgtcaaaattgagcatgatacaaataacataacaagctaattggtcttgtgaccttaattttccaatgctgtataaataatcttgttacatgatt |
153 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |
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| T |
3296809 |
gaaactgtcaatattgagcatgatacaaataacataacaacctaattggtcttgtgaccttaattttccaatgctaaataaataatttggttacatgatt |
3296908 |
T |
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| Q |
154 |
catgaaagag |
163 |
Q |
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| T |
3296909 |
tataaaagag |
3296918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 3301266 - 3301465
Alignment:
| Q |
18 |
agagaacctcaatctgtacacatggacaatgtataggaaactgtcaaaattgagcatgatacaaataacataacaagctaa---------------ttgg |
102 |
Q |
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| T |
3301266 |
agagaacctgaatctgtacacgtggacaaa-tacaggaaactgtcaaaattgaggatgatacaaattacataacgggataaaattagttgcttaatttag |
3301364 |
T |
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| Q |
103 |
tcttgtgaccttaattttccaatgctgtataaataatcttgttacatgattcatgaaagagttgattgaagttagcaagtatcagacatcaatacataat |
202 |
Q |
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| T |
3301365 |
tcttgtaaacttaattttcaaatgctaaataaataatcttcttacatgatttatgaaagagctgattgaagttagcaagtatcagaaatcaatacataat |
3301464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 3203670 - 3203527
Alignment:
| Q |
54 |
gaaactgtcaaaattgagcatgatacaaataacataacaagctaattggtcttgtgaccttaattttccaatgctgtataaataatcttgttacatga-t |
152 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||| |||| |||||| |||| ||||| ||| |||||||| ||||| ||| |||||||||| | |
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| T |
3203670 |
gaaactatcaaaattgagcatgatacaaatgacataacaaactaaatggtctcgtgaacttaaattttcaatgctgaataaacaatactgttacatgatt |
3203571 |
T |
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| Q |
153 |
tcatgaaagagttgattgaagttagcaagtatcagacatcaata |
196 |
Q |
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| T |
3203570 |
ttatgaaagggcgaattgaagttagcaagtatcacacatcaata |
3203527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 3195840 - 3195893
Alignment:
| Q |
76 |
atacaaataacataacaagctaattggtcttgtgaccttaattttccaatgctg |
129 |
Q |
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||||||||||| ||||||| ||| ||||||||||||||||||| |||||||| |
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| T |
3195840 |
atacaaataacttaacaagaaaatcagtcttgtgaccttaatttttcaatgctg |
3195893 |
T |
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