View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_84 (Length: 237)
Name: NF2848_low_84
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_84 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 36994484 - 36994259
Alignment:
| Q |
3 |
tatatatttatttttgctgtcaatggacatatatatactttcaactatacaaaaa----tatatacccagctgctttgtaactatatgttagccctttta |
98 |
Q |
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| T |
36994484 |
tatatatttatttttgctgtcaatggacatatatatactttcaactatacaaaaagatatatatacccagctgctttgtaactatatgttagccctttta |
36994385 |
T |
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| Q |
99 |
attcactttgtcatctttcaatgaataaattaggagttttgtcaaatataaatgagttatagcatannnnnnnnnnnnnnagacaaacttaaagcatgac |
198 |
Q |
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| T |
36994384 |
attccccttgtcatctttcaatgaataaattaggagttttgtcaaatataaatgagttatagcatattttttatttttttagacaaacttaaagcatgac |
36994285 |
T |
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| Q |
199 |
taaatttatatgcatatgtttcaaat |
224 |
Q |
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| T |
36994284 |
taaatttatatgcatatatttcaaat |
36994259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 36988580 - 36988495
Alignment:
| Q |
33 |
atatatactttcaactatacaaaaatatatacccagctgctttgtaact--atatgttagcccttttaattcactttgtcatcttt |
116 |
Q |
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||||||| |||| ||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
36988580 |
atatatattttctactatccaaaaatatatatcccgctgctttgtaactatatatgttagcccttttaattcactttggcatcttt |
36988495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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