View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2848_low_86 (Length: 237)

Name: NF2848_low_86
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2848_low_86
NF2848_low_86
[»] chr3 (3 HSPs)
chr3 (1-223)||(40354870-40355091)
chr3 (36-122)||(25386675-25386762)
chr3 (27-61)||(14262490-14262524)
[»] chr5 (3 HSPs)
chr5 (35-223)||(23596978-23597166)
chr5 (42-138)||(26725317-26725413)
chr5 (25-93)||(30190749-30190818)
[»] chr7 (5 HSPs)
chr7 (41-139)||(17141936-17142034)
chr7 (35-122)||(4548603-4548691)
chr7 (40-93)||(45342044-45342098)
chr7 (29-120)||(19312652-19312745)
chr7 (64-92)||(13766878-13766906)
[»] chr4 (6 HSPs)
chr4 (25-93)||(17543055-17543123)
chr4 (35-94)||(20749628-20749687)
chr4 (63-127)||(18449301-18449365)
chr4 (37-93)||(12459175-12459234)
chr4 (35-103)||(19033750-19033819)
chr4 (63-103)||(5210170-5210210)
[»] scaffold1924 (1 HSPs)
scaffold1924 (35-123)||(753-842)
[»] chr1 (4 HSPs)
chr1 (25-92)||(21307883-21307950)
chr1 (48-93)||(3255887-3255934)
chr1 (25-93)||(13303264-13303332)
chr1 (63-106)||(16674309-16674353)
[»] scaffold0035 (1 HSPs)
scaffold0035 (30-127)||(70961-71059)
[»] chr8 (3 HSPs)
chr8 (25-123)||(24819654-24819753)
chr8 (44-86)||(1687101-1687143)
chr8 (37-122)||(15662493-15662580)
[»] scaffold0001 (1 HSPs)
scaffold0001 (63-93)||(420948-420978)
[»] chr6 (1 HSPs)
chr6 (63-92)||(13250537-13250566)
[»] chr2 (2 HSPs)
chr2 (36-93)||(18118002-18118059)
chr2 (64-93)||(43938204-43938233)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40354870 - 40355091
Alignment:
Q  1 aacctttagaaacatcaaatgaattagatggataaatcggtaaaattacctccgacatccattggtaccacatgcatgtagagtcgtgtctagggaatta 100  Q
    |||||||  ||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40354870 aacctttgaaaacatcaaatgaattagaggg-taaatcggtaaaattacctccgacatccattgataccacatgcatgtagagtcgtgtctagggaatta 40354968  T
Q  101 catacacatgggttatgtgaaatatgtgccttggtgaaactatatgttggtgaatttggcgtaacttgtgaagttgtgtacttgaactttaatgaatgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40354969 catacacatgggttatgtgaaatatgtgccttggtgaaactatatgttggtgaatttggcgtaacttgtgaagttgtgtacttgaactttaatgaatgaa 40355068  T
Q  201 gatgcttgtacacttgattattg 223  Q
    |||||||| ||||||||||||||    
T  40355069 gatgcttggacacttgattattg 40355091  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 25386675 - 25386762
Alignment:
Q  36 atcggtaaaattacctccgacatcca-ttggtaccacatgcatgtagagtcgtgtctagggaattacatacacatgggttatgtgaaa 122  Q
    |||||||||||||||||||| || || ||||||||||||||||||| ||||| |||||| | ||||||| | |||| |||||||||||    
T  25386675 atcggtaaaattacctccgaaattcaattggtaccacatgcatgtaaagtcgagtctagagcattacatgcgcatgagttatgtgaaa 25386762  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 14262524 - 14262490
Alignment:
Q  27 gatggataaatcggtaaaattacctccgacatcca 61  Q
    ||||||||||||||||||||||||||| |||||||    
T  14262524 gatggataaatcggtaaaattacctccaacatcca 14262490  T

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Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 35 - 223
Target Start/End: Original strand, 23596978 - 23597166
Alignment:
Q  35 aatcggtaaaattacctccgacatccattggtaccacatgcatgtagagtcgtgtctagggaattacatacacatgggttatgtgaaatatgtgccttgg 134  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||  ||||||||    
T  23596978 aatcggtaaaattacctccgacatccaatggtatcacatgcatgtagagtcgtgtctagagaattacatacacatgagttatgtgaagtacatgccttgg 23597077  T
Q  135 tgaaactatatgttggtgaatttggcgtaacttgtgaagttgtgtacttgaactttaatgaatgaagatgcttgtacacttgattattg 223  Q
    ||||| ||| || |||||||||| | |||||||||||||||||| |||||||||| ||||||||| |||| || ||||||||| |||||    
T  23597078 tgaaattatgtgctggtgaattttgtgtaacttgtgaagttgtggacttgaacttgaatgaatgatgatgtttttacacttgaatattg 23597166  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 26725413 - 26725317
Alignment:
Q  42 aaaattacctccgacatccattggtaccacatgcatgtagagtcgtgtctagggaattacatacacatgggttatgtgaaatatgtgccttggtgaa 138  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||  ||||||||||||||  |||||||||| ||||||  ||||||||    
T  26725413 aaaattacctccgacatccaatggtaccagatgcatgtagagtcgtgtctagaaaattacatacacataagttatgtgaattatgtgttttggtgaa 26725317  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 30190749 - 30190818
Alignment:
Q  25 tagatggataaatcggtaaaat-tacctccgacatccattggtaccacatgcatgtagagtcgtgtctag 93  Q
    |||| |||| |||||||||||  ||||| ||||||||| ||||| |||||||||||||||||| ||||||    
T  30190749 tagagggatcaatcggtaaaacctaccttcgacatccaatggtatcacatgcatgtagagtcgagtctag 30190818  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 17142034 - 17141936
Alignment:
Q  41 taaaattacctccgacatccattggtaccacatgcatgtagagtcgtgtctagggaattacatacacatgggttatgtgaaatatgtgccttggtgaaa 139  Q
    |||||||| |||||||||||| |||||||||||||||||||||||| |||||  ||||||||||||||||  ||||||||||||  ||||||| |||||    
T  17142034 taaaattaactccgacatccaatggtaccacatgcatgtagagtcgagtctacagaattacatacacatgaattatgtgaaatacatgccttgatgaaa 17141936  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 4548691 - 4548603
Alignment:
Q  35 aatcggtaaaattacctccgacatccatt-ggtaccacatgcatgtagagtcgtgtctagggaattacatacacatgggttatgtgaaa 122  Q
    ||||||||||||||| |||||||||||   ||||||||||||||||||| |||||||||| | ||||||| ||| || |||||||||||    
T  4548691 aatcggtaaaattacatccgacatccaaccggtaccacatgcatgtagactcgtgtctagagtattacatgcacttgagttatgtgaaa 4548603  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 45342098 - 45342044
Alignment:
Q  40 gtaaaattacctccgacatccat-tggtaccacatgcatgtagagtcgtgtctag 93  Q
    ||||||||||||| ||||||||  ||||||||||||||||||||||| |||||||    
T  45342098 gtaaaattacctctgacatccagatggtaccacatgcatgtagagtcatgtctag 45342044  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 19312745 - 19312652
Alignment:
Q  29 tggataaatcggtaaaa-ttacctccgacatccat-tggtaccacatgcatgtagagtcgtgtctagggaattacatacacatgggttatgtga 120  Q
    ||||| ||||||||| | |||| |||||||||||| ||||||||||||||| |||| || |||||| |  ||||||| || ||| |||||||||    
T  19312745 tggatcaatcggtaatagttacttccgacatccatatggtaccacatgcatttagaatcatgtctaagccattacatgcatatgagttatgtga 19312652  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 92
Target Start/End: Original strand, 13766878 - 13766906
Alignment:
Q  64 ggtaccacatgcatgtagagtcgtgtcta 92  Q
    |||||||||||||||||||||||||||||    
T  13766878 ggtaccacatgcatgtagagtcgtgtcta 13766906  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 17543055 - 17543123
Alignment:
Q  25 tagatggataaatcggtaaaattacctccgacatccattggtaccacatgcatgtagagtcgtgtctag 93  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||    
T  17543055 tagagggatcaatcggtaaaattacctccgacatccaatggtaccacatgtatgtagagtcgagtctag 17543123  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 20749628 - 20749687
Alignment:
Q  35 aatcggtaaaattacctccgacatccattggtaccacatgcatgtagagtcgtgtctagg 94  Q
    ||||||||| ||||| ||||||||||| || ||||||||||||||||||||| |||||||    
T  20749628 aatcggtaacattacttccgacatccaatgataccacatgcatgtagagtcgagtctagg 20749687  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 18449365 - 18449301
Alignment:
Q  63 tggtaccacatgcatgtagagtcgtgtctagggaattacatacacatgggttatgtgaaatatgt 127  Q
    ||||||||||||||||||||||| ||||||| |  |||||| |||||| ||||||||||| ||||    
T  18449365 tggtaccacatgcatgtagagtcatgtctagagtgttacatgcacatgagttatgtgaaacatgt 18449301  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 12459234 - 12459175
Alignment:
Q  37 tcggtaaaattacctccgacatcca---ttggtaccacatgcatgtagagtcgtgtctag 93  Q
    ||||||| ||||||||||| |||||   ||||||||||||||||||||||  ||||||||    
T  12459234 tcggtaagattacctccgaaatccaaaattggtaccacatgcatgtagagatgtgtctag 12459175  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 19033750 - 19033819
Alignment:
Q  35 aatcggtaaaattacctccgacatccat-tggtaccacatgcatgtagagtcgtgtctagggaattacat 103  Q
    |||| ||||||||||||| ||||||||  ||||||||||| |||||| ||||| |||||| | |||||||    
T  19033750 aatcagtaaaattacctctgacatccaaatggtaccacatacatgtatagtcgagtctagagcattacat 19033819  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 5210210 - 5210170
Alignment:
Q  63 tggtaccacatgcatgtagagtcgtgtctagggaattacat 103  Q
    |||||||||||||||| ||||||||||||||  ||||||||    
T  5210210 tggtaccacatgcatgaagagtcgtgtctagaaaattacat 5210170  T

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Target: scaffold1924 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1924
Description:

Target: scaffold1924; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 753 - 842
Alignment:
Q  35 aatcggtaaaattacctccgacatcc-attggtaccacatgcatgtagagtcgtgtctagggaattacatacacatgggttatgtgaaat 123  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||||||||||  |||||| | ||||||| ||| || | ||||||||||    
T  753 aatccgtaaaattacctctgacatcccattggtaccacatgcatgtagagtcaagtctagagcattacatgcacttgagatatgtgaaat 842  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 21307883 - 21307950
Alignment:
Q  25 tagatggataaatcggtaaaattacctccgacatccattggtaccacatgcatgtagagtcgtgtcta 92  Q
    ||||||||| ||||  |||| ||||  |||||||||| ||||||||||||||||||||||||||||||    
T  21307883 tagatggatcaatcaataaagttactaccgacatccaatggtaccacatgcatgtagagtcgtgtcta 21307950  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 3255934 - 3255887
Alignment:
Q  48 acctccgacatccat--tggtaccacatgcatgtagagtcgtgtctag 93  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||    
T  3255934 acctccgacatccaaaatggtaccacatgcatgtagagtcgtgtctag 3255887  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 13303264 - 13303332
Alignment:
Q  25 tagatggataaatcggtaaaattacctccgacatccattggtaccacatgcatgtagagtcgtgtctag 93  Q
    |||| |||| ||||||||||||| | || |||||| | |||||||||||||||||| ||||| ||||||    
T  13303264 tagagggatcaatcggtaaaattgcttctgacatcgaatggtaccacatgcatgtatagtcgagtctag 13303332  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 16674353 - 16674309
Alignment:
Q  63 tggtaccacatgcatgtagagtcgtgtctagg-gaattacataca 106  Q
    ||||||||||||||| |||||||||||||||| | ||||||||||    
T  16674353 tggtaccacatgcatatagagtcgtgtctaggcgcattacataca 16674309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 70961 - 71059
Alignment:
Q  30 ggataaatcggtaaaattacctccgacatc-cattggtaccacatgcatgtagagtcgtgtctagggaattacatacacatgggttatgtgaaatatgt 127  Q
    ||||||||||||||||||||||||||| ||  | | ||| |||||||||||||||||| |||||| | ||||||| |||||| | | ||||||| ||||    
T  70961 ggataaatcggtaaaattacctccgacgtctaaattgtatcacatgcatgtagagtcgagtctagagcattacatgcacatgagatgtgtgaaacatgt 71059  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 24819654 - 24819753
Alignment:
Q  25 tagatggataaatcggtaaaattacctccgacatccat-tggtaccacatgcatgtagagtcgtgtctagggaattacatacacatgggttatgtgaaat 123  Q
    |||| |||| ||| || |||||||||||||||||  |  |||||||||||||||| ||||||||||||||   ||||||| |||||| | | ||||||||    
T  24819654 tagagggatcaattggcaaaattacctccgacatggaaatggtaccacatgcatgcagagtcgtgtctagaccattacatgcacatgagatgtgtgaaat 24819753  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 1687101 - 1687143
Alignment:
Q  44 aattacctccgacatccattggtaccacatgcatgtagagtcg 86  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||    
T  1687101 aattacctccgacctccaatggcaccacatgcatgtagagtcg 1687143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 15662493 - 15662580
Alignment:
Q  37 tcggtaaaattacctccgacatccat--tggtaccacatgcatgtagagtcgtgtctagggaattacatacacatgggttatgtgaaa 122  Q
    ||||||| |||| |||||| |||||   ||||||||||||||||||||||| ||||||  | |||| || ||| || |||||||||||    
T  15662493 tcggtaatattatctccgaaatccaaaatggtaccacatgcatgtagagtcatgtctaaagcattatatgcacgtgagttatgtgaaa 15662580  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 93
Target Start/End: Complemental strand, 420978 - 420948
Alignment:
Q  63 tggtaccacatgcatgtagagtcgtgtctag 93  Q
    |||||||||||||||||||||||||||||||    
T  420978 tggtaccacatgcatgtagagtcgtgtctag 420948  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 13250537 - 13250566
Alignment:
Q  63 tggtaccacatgcatgtagagtcgtgtcta 92  Q
    ||||||||||||||||||||||||||||||    
T  13250537 tggtaccacatgcatgtagagtcgtgtcta 13250566  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 18118059 - 18118002
Alignment:
Q  36 atcggtaaaattacctccgacatccattggtaccacatgcatgtagagtcgtgtctag 93  Q
    ||||||||||||||| ||||| | || ||||||||| || || |||||||||||||||    
T  18118059 atcggtaaaattaccaccgacgttcaatggtaccacgtgtatttagagtcgtgtctag 18118002  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 93
Target Start/End: Complemental strand, 43938233 - 43938204
Alignment:
Q  64 ggtaccacatgcatgtagagtcgtgtctag 93  Q
    ||||||||||||||||||||||||||||||    
T  43938233 ggtaccacatgcatgtagagtcgtgtctag 43938204  T

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