View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_88 (Length: 234)
Name: NF2848_low_88
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 962114 - 962246
Alignment:
| Q |
1 |
tacaatgaccatttttctctaacgaatcggagggttaagataaaaagaaaatgcgcattactattgcgaaagacacgagcatgaacatgatgtaacatta |
100 |
Q |
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| T |
962114 |
tacaatgaccttttttctctaacgaatcggagggttaagataaaaagaaaatgcgcattactattgcaaaagacacgagcatgagcatgatgtaacatta |
962213 |
T |
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| Q |
101 |
ctatgtaatagaaaaaacataatccaaggtaag |
133 |
Q |
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| T |
962214 |
ctatgtaatagaaaaaacataatccaaggtaag |
962246 |
T |
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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 962284 - 962337
Alignment:
| Q |
173 |
caaaagaaaaatgtgcactaaacattagggatgtgccacgtcttcatattcttg |
226 |
Q |
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| T |
962284 |
caaaagaaaaatgtgcactaaacattagggatgtgccacgtcttcatattcttg |
962337 |
T |
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