View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2848_low_91 (Length: 226)
Name: NF2848_low_91
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_91 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 49201755 - 49201975
Alignment:
| Q |
1 |
caaacacatcaatcacgcaataaaagttactactgatataaacctaatacttgcattgcatcatcctaattaagcgcttttctcagataaggctcccatc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49201755 |
caaacacatcaatcacacaataaaaggtactactgatataaacctaatacttgcattgcatcatcctaattaagggcttttctcagataaggctcccatc |
49201854 |
T |
|
| Q |
101 |
caagcaggaggcaacatgcccgtttgctcatggacagtcttaaacaaaggtggcaacatcttgtagacaccagcaacttctttcatacccatggaacctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49201855 |
caagcaggaggcaacatgcccgtttgctcatggacagtcttaaacagaggtggcaacatcttgtagacaccagcaacttctttcatacccatggcacctt |
49201954 |
T |
|
| Q |
201 |
cagttttttcaccaccactat |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
49201955 |
cagttttttcaccaccactat |
49201975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 56 - 205
Target Start/End: Original strand, 49186830 - 49186979
Alignment:
| Q |
56 |
ttgcatcatcctaattaagcgcttttctcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaaacaaaggtggca |
155 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49186830 |
ttgcatcatcctaatcaagagcttttctcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaaacagaggtggca |
49186929 |
T |
|
| Q |
156 |
acatcttgtagacaccagcaacttctttcatacccatggaaccttcagtt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
49186930 |
acatcttgtagacaccagcaacttctttcatacccatggcaccatcagtt |
49186979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 49211365 - 49211481
Alignment:
| Q |
70 |
ttaagcgcttttctcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaaacaaaggtggcaacatcttgtagaca |
169 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
49211365 |
ttaagagcttttgtcagataaggatcccatccaagcaggaggcaacatgcctgtttgctcatggacagtcttaaacagaggtggcaacatcttgtacaca |
49211464 |
T |
|
| Q |
170 |
ccagcaacttctttcat |
186 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
49211465 |
ccagcaacttctttcat |
49211481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 49206727 - 49206914
Alignment:
| Q |
12 |
atcacgcaataaaagttactactgatataaacctaatacttgcattgcatcatcctaattaagcgcttttctcagataaggctcccatccaagcaggagg |
111 |
Q |
| |
|
||||| ||||||||| |||| || | |||||||||||||||||| ||| ||||||| | |||| |||| ||| | |||||||||||| ||||| |
|
|
| T |
49206727 |
atcacacaataaaaggtactgctattgtaaacctaatacttgcatc------tccaaattaagagtttttgtcaggtaaagatcccatccaagccggagg |
49206820 |
T |
|
| Q |
112 |
caacatgcccgtttgctcatggacagtcttaaacaaaggtggcaacatcttgtagacaccagcaacttctttcatacccatggaaccttcagtt |
205 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49206821 |
aaacatgcctgtttgctcatggacagtcttaaacagaggcggcaacatcttgtagacaccagcaacttctttcatacccatggcaccttcagtt |
49206914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 49190534 - 49190663
Alignment:
| Q |
56 |
ttgcatcatcctaattaagcgcttttctcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaaacaaaggtggca |
155 |
Q |
| |
|
|||||||||||||||| | | |||| |||| ||| |||||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49190534 |
ttgcatcatcctaattcaa-gtttttgtcaggcaagactcccatccaagcaggtggtaacattcccgtttgctcatgaacagtcttaaacaaaggtggca |
49190632 |
T |
|
| Q |
156 |
acatcttgtagacaccagcaacttctttcat |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
49190633 |
acatcttgtagacaccagcaacttctttcat |
49190663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 56 - 201
Target Start/End: Original strand, 31526646 - 31526791
Alignment:
| Q |
56 |
ttgcatcatcctaattaagcgcttttctcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaaacaaaggtggca |
155 |
Q |
| |
|
||||||| ||||||||||| |||||| || ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31526646 |
ttgcatcctcctaattaagagcttttgtctgataaggttcctatccaagcaggaggcaacatgcctgtttgctcatggacagtcttaaacaaaggtggca |
31526745 |
T |
|
| Q |
156 |
acatcttgtagacaccagcaacttctttcatacccatggaaccttc |
201 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
31526746 |
acatcttgtaaacaccagcaacctctttcatacccatagaaccttc |
31526791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 51823510 - 51823672
Alignment:
| Q |
37 |
tataaacctaatacttgcattgcatcatcctaattaagcgcttttctcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggaca |
136 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| |||||| || ||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51823510 |
tataaacctaatacttc--ttgcatcctcctaattaagagcttttgtcggataaggttcccatccaagcaggaggcaacatgcctgtttgctcatggaca |
51823607 |
T |
|
| Q |
137 |
gtcttaaacaaaggtggcaacatcttgtagacaccagcaacttctttcatacccatggaaccttc |
201 |
Q |
| |
|
||||| |||| |||||||| ||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
51823608 |
gtcttgaacagaggtggcagcatcttgtagacaccagcaacctctttcatacccatagaaccttc |
51823672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 32593784 - 32593607
Alignment:
| Q |
19 |
aataaaagttactactgatataaacctaatacttgcattgcatcatcctaattaagcgcttttctcagataaggctcccatccaagcaggaggcaacatg |
118 |
Q |
| |
|
|||||||| || |||| |||||||||||||||||||| | ||||||||||| |||||| || ||||||| ||||||||||||||||||||||||| |
|
|
| T |
32593784 |
aataaaaggtattactactataaacctaatacttgcat-----cctcctaattaagagcttttgtcggataaggttcccatccaagcaggaggcaacatg |
32593690 |
T |
|
| Q |
119 |
cccgtttgctcatggacagtcttaaacaaaggtggcaacatcttgtagacaccagcaacttctttcatacccatggaaccttc |
201 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
32593689 |
cctgtttgctcatggacagtcttaaacagaggtggcagcatcttgtaaacaccagcaacctctttcatgcccatagaaccttc |
32593607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 37030012 - 37030133
Alignment:
| Q |
68 |
aattaagcgcttttctcagataaggctcccatccaagcaggaggcaacatgcccgtttgctcatggacagtcttaaacaaaggtggcaacatcttgtaga |
167 |
Q |
| |
|
||||||| | |||| |||| ||| |||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37030012 |
aattaagagtttttgtcaggcaagactcccatccaagcaggtggtaacattcccgtttgctcatggacagtcttaaacaaaggtggcaacatcttgtaga |
37030111 |
T |
|
| Q |
168 |
caccagcaacttctttcatacc |
189 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37030112 |
caccagcaacttctttcatacc |
37030133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 52267516 - 52267388
Alignment:
| Q |
19 |
aataaaagttactactgatataaacctaatacttgcattgcatcatcctaattaagcgcttttctcagataaggctcccatccaagcaggaggcaacatg |
118 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||| ||||||| ||||||||||| |||||| || ||||||| ||||||||||||||||||||||||| |
|
|
| T |
52267516 |
aataaaaggtactactactataaacctaatacttgc-ttgcatcctcctaattaagagcttttgtcggataaggttcccatccaagcaggaggcaacatg |
52267418 |
T |
|
| Q |
119 |
cccgtttgctcatggacagtcttaaacaaa |
148 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |
|
|
| T |
52267417 |
cctgtttgctcatggacagtcttaaacaaa |
52267388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 114 - 216
Target Start/End: Original strand, 26755869 - 26755971
Alignment:
| Q |
114 |
acatgcccgtttgctcatggacagtcttaaacaaaggtggcaacatcttgtagacaccagcaacttctttcatacccatggaaccttcagttttttcacc |
213 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| ||| ||||||||||| || |
|
|
| T |
26755869 |
acatgcctgtttgctcatggactgtcttaaacagaggtggcaacatcttgtacacaccagcaacttctttcatacctatgccaccgtcagttttttcgcc |
26755968 |
T |
|
| Q |
214 |
acc |
216 |
Q |
| |
|
||| |
|
|
| T |
26755969 |
acc |
26755971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University